Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1034374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1051121	1.00[CHB][hapmap]
rs11225429	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[LWK][hapmap];0.90[EUR][1000 genomes]
rs11225439	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11225446	1.00[CHD][hapmap]
rs12277638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12284928	0.92[EUR][1000 genomes]
rs12289128	0.92[EUR][1000 genomes]
rs12295590	1.00[MEX][hapmap]
rs12801466	1.00[CHB][hapmap]
rs17293348	1.00[CHB][hapmap]
rs17293607	1.00[CHB][hapmap]
rs17293642	1.00[CHB][hapmap]
rs17293823	1.00[CHB][hapmap]
rs1892875	1.00[MEX][hapmap]
rs2276108	1.00[CHB][hapmap]
rs3025067	0.89[EUR][1000 genomes]
rs3025090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs3213460	1.00[CHB][hapmap]
rs3819099	1.00[CHB][hapmap]
rs41380244	0.86[EUR][1000 genomes]
rs58264782	0.92[EUR][1000 genomes]
rs7117506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102690800-102700800	Weak transcription	Stomach Mucosa	stomach
2	chr11:102691000-102696600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:102695000-102695600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:102695200-102695800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:102695200-102696200	Enhancers	HMEC	breast
6	chr11:102695400-102700200	Weak transcription	NHDF-Ad	bronchial

Quick Search: