Variant report

Variant	rs3025090
Chromosome Location	chr11:102714883-102714884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:102714882-102714932	HEEpiC	esophagus:	n/a
2	chr11:102714882-102714932	LNCaP	prostate:	n/a
3	chr11:102714882-102714932	HCM	heart:	n/a
4	chr11:102714882-102714932	NHDF-neo	bronchial:	n/a
5	chr11:102714882-102714932	GM19239	blood:	n/a
6	chr11:102714882-102714932	HCT-116	colon:	n/a
7	chr11:102714882-102714932	PrEC	prostate:	n/a
8	chr11:102714882-102714932	Caco-2	colon:	n/a
9	chr11:102714882-102714932	SKMC	muscle:	n/a
10	chr11:102714882-102714932	NH-A	brain:	n/a
11	chr11:102714882-102714932	HCPEpiC	choroid plexus:	n/a
12	chr11:102714882-102714932	SAEC	small airway:	n/a
13	chr11:102714882-102714932	BE2_C	brain:	n/a
14	chr11:102714882-102714932	HUVEC	blood vessel:	n/a
15	chr11:102714882-102714932	GM12878	blood:	n/a
16	chr11:102714882-102714932	MCF10A-Er-Src	breast:	n/a
17	chr11:102714882-102714932	GM12892	blood:	n/a
18	chr11:102714882-102714932	H1-hESC	embryonic stem cell:	embryo
19	chr11:102714882-102714932	NT2-D1	testis:	n/a
20	chr11:102714882-102714932	K562	blood:	n/a
21	chr11:102714882-102714932	MCF-7	breast:	n/a
22	chr11:102714882-102714932	HEK293	kidney:	embryo
23	chr11:102714882-102714932	HNPCEpiC	eye:	n/a
24	chr11:102714882-102714932	HAEpiC	amniotic membrane:	n/a
25	chr11:102714882-102714932	PFSK-1	brain:	n/a
26	chr11:102714882-102714932	GM06990	blood:	n/a
27	chr11:102714882-102714932	HL-60	blood:	n/a
28	chr11:102714882-102714932	HRE	kidney:	n/a
29	chr11:102714882-102714932	NHBE	bronchial:	n/a
30	chr11:102714882-102714932	HCF	heart:	n/a
31	chr11:102714882-102714932	Jurkat	blood:	n/a
32	chr11:102714882-102714932	BJ	skin:	n/a
33	chr11:102714882-102714932	HMEC	breast:	n/a
34	chr11:102714882-102714932	AG04450	lung:	fetal
35	chr11:102714882-102714932	ProgFib	skin:	n/a
36	chr11:102714882-102714932	SK-N-MC	brain:	n/a
37	chr11:102714882-102714932	ovcar-3	ovarian:	n/a
38	chr11:102714882-102714932	ECC-1	luminal epithelium:	n/a
39	chr11:102714882-102714932	AG10803	skin:	n/a
40	chr11:102714882-102714932	AG09309	skin:	n/a
41	chr11:102714882-102714932	AG04449	skin:	fetal
42	chr11:102714882-102714932	RPTEC	kidney:	n/a
43	chr11:102714882-102714932	HRPEpiC	eye:	n/a
44	chr11:102714882-102714932	U87	brain:	n/a
45	chr11:102714882-102714932	PANC-1	pancreas:	n/a
46	chr11:102714882-102714932	HRCEpiC	kidney:	n/a
47	chr11:102714882-102714932	HepG2	liver:	n/a
48	chr11:102714882-102714932	A549	lung:	n/a
49	chr11:102714882-102714932	AG09319	gingival:	n/a
50	chr11:102714882-102714932	Hepatocyte	liver:	n/a

No data

Variant related genes	Relation type
MMP3	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1034374	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034375	0.86[EUR][1000 genomes]
rs1051121	1.00[CHB][hapmap]
rs11225429	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225439	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284928	1.00[ASN][1000 genomes]
rs12289128	1.00[ASN][1000 genomes]
rs12801466	1.00[CHB][hapmap]
rs17293348	1.00[CHB][hapmap]
rs17293607	1.00[CHB][hapmap]
rs17293642	1.00[CHB][hapmap]
rs17293823	1.00[CHB][hapmap]
rs2276108	1.00[CHB][hapmap]
rs3025067	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213460	1.00[CHB][hapmap]
rs3819099	1.00[CHB][hapmap]
rs41380244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58264782	1.00[ASN][1000 genomes]
rs7117506	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102711600-102715200	Weak transcription	Stomach Mucosa	stomach
2	chr11:102713800-102715000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:102713800-102715000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:102713800-102715200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102714000-102715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:102714000-102715000	Enhancers	NHLF	lung
7	chr11:102714000-102715200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:102714200-102715200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:102714400-102715400	Enhancers	NHDF-Ad	bronchial
10	chr11:102714400-102716000	Enhancers	NHEK	skin
11	chr11:102714400-102716800	Weak transcription	Fetal Stomach	stomach
12	chr11:102714400-102720000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:102714400-102721600	Weak transcription	NH-A	brain
14	chr11:102714600-102716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:102714600-102719400	Weak transcription	HMEC	breast
16	chr11:102714600-102719800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:102714600-102719800	Weak transcription	Osteobl	bone
18	chr11:102714600-102720000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:102714800-102716800	Weak transcription	Hela-S3	cervix
20	chr11:102714800-102719800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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