Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs178733	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs184430	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs322738	0.86[ASN][1000 genomes]
rs322749	0.97[ASN][1000 genomes]
rs322751	0.97[ASN][1000 genomes]
rs322752	0.89[ASN][1000 genomes]
rs322755	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs322756	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs322760	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs322761	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs322762	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs322765	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs322766	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs322768	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs322770	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs322771	0.82[ASN][1000 genomes]
rs322775	0.83[ASN][1000 genomes]
rs322778	0.83[ASN][1000 genomes]
rs322807	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs322812	0.88[CHB][hapmap]
rs322818	0.87[CHB][hapmap]
rs6960004	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127787000-127789600	Weak transcription	Right Atrium	heart
2	chr7:127788600-127796000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:127788800-127789000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr7:127788800-127789000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:127788800-127790200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search: