Variant report

Variant	rs322738
Chromosome Location	chr7:127785381-127785382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs178733	0.84[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs184430	0.92[ASN][1000 genomes]
rs322730	0.86[ASN][1000 genomes]
rs322732	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322749	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322751	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322752	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs322755	0.85[ASN][1000 genomes]
rs322756	0.95[ASN][1000 genomes]
rs322760	0.94[ASN][1000 genomes]
rs322761	0.94[ASN][1000 genomes]
rs322762	0.94[ASN][1000 genomes]
rs322765	0.94[ASN][1000 genomes]
rs322766	0.94[ASN][1000 genomes]
rs322768	0.93[ASN][1000 genomes]
rs322770	0.93[ASN][1000 genomes]
rs322771	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs322775	0.92[ASN][1000 genomes]
rs322778	0.92[ASN][1000 genomes]
rs322780	0.82[ASN][1000 genomes]
rs322782	0.82[ASN][1000 genomes]
rs322783	0.83[ASN][1000 genomes]
rs322784	0.83[ASN][1000 genomes]
rs322785	0.83[ASN][1000 genomes]
rs322786	0.85[ASN][1000 genomes]
rs322787	0.84[ASN][1000 genomes]
rs322790	0.84[ASN][1000 genomes]
rs322791	0.84[ASN][1000 genomes]
rs322806	0.84[ASN][1000 genomes]
rs322807	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs322808	0.84[ASN][1000 genomes]
rs322809	0.84[ASN][1000 genomes]
rs322811	0.83[ASN][1000 genomes]
rs322812	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs322818	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs5028619	0.84[ASN][1000 genomes]
rs6960004	0.94[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127785200-127785400	Bivalent Enhancer	Fetal Stomach	stomach
2	chr7:127785200-127785600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:127785200-127786400	Enhancers	NHEK	skin
4	chr7:127785200-127786600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:127785200-127786600	Enhancers	HMEC	breast

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