Variant report

Variant	rs322778
Chromosome Location	chr7:127758848-127758849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127755171..127759390-chr7:127760267..127762582,4	K562	blood:
2	chr7:127749559..127751658-chr7:127755944..127759580,3	K562	blood:
3	chr7:127758182..127760933-chr7:128002720..128004852,2	K562	blood:
4	chr7:127752221..127755184-chr7:127757335..127759629,2	K562	blood:
5	chr7:127747173..127749516-chr7:127758374..127760292,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs178733	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs184430	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs322730	0.83[ASN][1000 genomes]
rs322732	0.83[ASN][1000 genomes]
rs322738	0.92[ASN][1000 genomes]
rs322749	0.82[ASN][1000 genomes]
rs322751	0.82[ASN][1000 genomes]
rs322752	0.89[ASN][1000 genomes]
rs322755	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs322756	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs322760	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs322761	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs322762	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs322765	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs322766	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs322768	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs322770	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs322771	0.97[ASN][1000 genomes]
rs322775	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs322780	0.90[ASN][1000 genomes]
rs322782	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs322783	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322784	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322785	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322786	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs322787	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322790	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322791	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322806	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322807	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322808	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322809	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322811	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322812	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322818	0.87[ASN][1000 genomes]
rs5028619	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6960004	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127753400-127762000	Weak transcription	Fetal Brain Female	brain
3	chr7:127756000-127759000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:127756000-127761400	Weak transcription	Osteobl	bone
5	chr7:127756000-127762000	Weak transcription	HSMM	muscle
6	chr7:127756200-127761800	Weak transcription	Esophagus	oesophagus
7	chr7:127756600-127761200	Weak transcription	NHEK	skin
8	chr7:127756600-127761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:127757000-127759200	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:127757200-127760600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:127757200-127761000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:127757400-127759600	Enhancers	Fetal Thymus	thymus
13	chr7:127758000-127761000	Weak transcription	Spleen	Spleen
14	chr7:127758600-127761800	Weak transcription	Primary B cells from cord blood	blood
15	chr7:127758800-127759000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:127758800-127759000	Enhancers	Thymus	Thymus
17	chr7:127758800-127759600	Enhancers	Primary monocytes fromperipheralblood	blood

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