Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:127755171..127759390-chr7:127760267..127762582,4	K562	blood:
2	chr7:127749559..127751658-chr7:127755944..127759580,3	K562	blood:
3	chr7:127758182..127760933-chr7:128002720..128004852,2	K562	blood:
4	chr7:127752221..127755184-chr7:127757335..127759629,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs178733	0.94[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs184430	0.90[ASN][1000 genomes]
rs322738	0.82[ASN][1000 genomes]
rs322756	0.87[ASN][1000 genomes]
rs322760	0.88[ASN][1000 genomes]
rs322761	0.88[ASN][1000 genomes]
rs322762	0.88[ASN][1000 genomes]
rs322765	0.88[ASN][1000 genomes]
rs322766	0.88[ASN][1000 genomes]
rs322768	0.89[ASN][1000 genomes]
rs322770	0.89[ASN][1000 genomes]
rs322771	0.87[ASN][1000 genomes]
rs322775	0.90[ASN][1000 genomes]
rs322778	0.90[ASN][1000 genomes]
rs322782	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs322783	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs322784	0.97[ASN][1000 genomes]
rs322785	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs322786	0.97[ASN][1000 genomes]
rs322787	0.95[ASN][1000 genomes]
rs322790	0.95[ASN][1000 genomes]
rs322791	0.95[ASN][1000 genomes]
rs322806	0.95[ASN][1000 genomes]
rs322807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs322808	0.95[ASN][1000 genomes]
rs322809	0.95[ASN][1000 genomes]
rs322811	0.94[ASN][1000 genomes]
rs322812	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs322818	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs5028619	0.95[ASN][1000 genomes]
rs6960004	0.94[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127753400-127762000	Weak transcription	Fetal Brain Female	brain
3	chr7:127756000-127759000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:127756000-127761400	Weak transcription	Osteobl	bone
5	chr7:127756000-127762000	Weak transcription	HSMM	muscle
6	chr7:127756200-127758800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:127756200-127761800	Weak transcription	Esophagus	oesophagus
8	chr7:127756600-127761200	Weak transcription	NHEK	skin
9	chr7:127756600-127761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:127757000-127759200	Enhancers	Primary B cells from peripheral blood	blood
11	chr7:127757200-127758600	Enhancers	Primary B cells from cord blood	blood
12	chr7:127757200-127760600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:127757200-127761000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:127757400-127759600	Enhancers	Fetal Thymus	thymus
15	chr7:127758000-127761000	Weak transcription	Spleen	Spleen

Quick Search: