Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11115937	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11115951	0.80[AMR][1000 genomes]
rs11115954	0.83[EUR][1000 genomes]
rs1397893	0.89[EUR][1000 genomes]
rs1397894	0.89[EUR][1000 genomes]
rs1497341	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1497348	0.88[EUR][1000 genomes]
rs1497349	0.88[EUR][1000 genomes]
rs1511581	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1603574	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1858328	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2645976	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2667477	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs324771	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs324788	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs365870	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs392087	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs398380	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421713	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7961422	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7962126	0.86[EUR][1000 genomes]
rs904091	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs990646	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83967200-83968000	Enhancers	NHEK	skin
2	chr12:83967400-83967600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:83967400-83967800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:83967400-83968000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:83967400-83968200	Enhancers	HMEC	breast

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