Variant report

Variant	rs7961422
Chromosome Location	chr12:84065780-84065781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10779016	0.81[AMR][1000 genomes]
rs10862729	0.85[ASN][1000 genomes]
rs10862732	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11115937	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11115951	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11115954	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11115987	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11115988	0.85[ASN][1000 genomes]
rs11115992	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11115993	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11115996	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11531162	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11533593	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11561341	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1156938	0.81[AMR][1000 genomes]
rs11832354	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11833515	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12301047	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1397893	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1397894	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1497341	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1497348	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1497349	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1511581	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1511585	0.81[AMR][1000 genomes]
rs1603574	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1841343	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1841344	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1841345	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1841346	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1841347	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1858328	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903302	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903303	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2169177	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2173190	0.81[AMR][1000 genomes]
rs2645976	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2667477	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs324766	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs324771	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs365870	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs392087	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs398380	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3993343	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs421713	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4882398	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56172305	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58417914	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67932408	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68077020	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7297591	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7301076	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7962126	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7964886	0.81[AMR][1000 genomes]
rs904091	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs990646	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469496	chr12:84014359-84074475	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv559562	chr12:84014359-84074475	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv559563	chr12:84017043-84450824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899355	chr12:84035467-84147295	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037138	chr12:84035912-84429867	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541553	chr12:84035912-84429867	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1035818	chr12:84040289-84452115	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv559564	chr12:84042109-84441408	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1035252	chr12:84043334-84446432	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1041804	chr12:84050772-84466603	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1039889	chr12:84053336-84426064	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv541554	chr12:84053336-84426064	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1049383	chr12:84062416-84290464	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv469497	chr12:84065324-84154003	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv559565	chr12:84065324-84154003	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84065400-84068000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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