Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11115937	0.88[EUR][1000 genomes]
rs11115954	0.81[EUR][1000 genomes]
rs1397893	0.85[EUR][1000 genomes]
rs1397894	0.85[EUR][1000 genomes]
rs1497341	0.93[EUR][1000 genomes]
rs1497348	0.85[EUR][1000 genomes]
rs1497349	0.85[EUR][1000 genomes]
rs1511581	0.93[EUR][1000 genomes]
rs1603574	0.84[EUR][1000 genomes]
rs1813316	0.87[CHD][hapmap]
rs1858328	0.85[EUR][1000 genomes]
rs2645976	0.87[EUR][1000 genomes]
rs2667477	0.90[EUR][1000 genomes]
rs324766	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs324771	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs324788	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs365870	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs392087	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs398380	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs421713	0.87[EUR][1000 genomes]
rs7961422	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7962126	0.83[EUR][1000 genomes]
rs990646	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83950400-83953000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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