Variant report

Variant	rs326801
Chromosome Location	chr6:44543776-44543777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1040940	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322662	0.95[EUR][1000 genomes]
rs1407562	0.89[EUR][1000 genomes]
rs1407563	0.90[ASN][1000 genomes]
rs164673	1.00[ASN][1000 genomes]
rs164674	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs164680	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs184475	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853307	0.89[EUR][1000 genomes]
rs326802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326805	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326807	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326814	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927486	0.81[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44538600-44544400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:44540200-44543800	Weak transcription	HSMMtube	muscle
3	chr6:44543000-44543800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:44543000-44545400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:44543200-44544800	Enhancers	Osteobl	bone
6	chr6:44543400-44544600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:44543600-44544600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:44543600-44544800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:44543600-44544800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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