Variant report

Variant	rs1853307
Chromosome Location	chr6:44537680-44537681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44535829..44538039-chr6:44545502..44547570,2	K562	blood:
2	chr6:44536539..44539243-chr6:44545765..44547570,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1040940	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1322662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1407562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407563	0.89[ASN][1000 genomes]
rs164673	1.00[AFR][1000 genomes]
rs164674	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs184475	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1853306	1.00[ASN][1000 genomes]
rs326801	0.89[EUR][1000 genomes]
rs326802	0.89[EUR][1000 genomes]
rs326803	0.89[EUR][1000 genomes]
rs326804	0.89[EUR][1000 genomes]
rs326805	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs326806	0.89[EUR][1000 genomes]
rs326807	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs326814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs326817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6923772	1.00[ASN][1000 genomes]
rs73429343	0.85[AMR][1000 genomes]
rs7746930	1.00[ASN][1000 genomes]
rs7765458	1.00[ASN][1000 genomes]
rs927486	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44536600-44538600	Enhancers	Fetal Muscle Leg	muscle
2	chr6:44536800-44538000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:44536800-44538600	Enhancers	Brain Substantia Nigra	brain
4	chr6:44536800-44538600	Enhancers	HSMMtube	muscle
5	chr6:44536800-44538800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:44536800-44538800	Enhancers	Left Ventricle	heart
7	chr6:44537000-44538000	Enhancers	Brain Anterior Caudate	brain
8	chr6:44537000-44538400	Enhancers	Ovary	ovary
9	chr6:44537000-44538400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:44537200-44538000	Enhancers	Adipose Nuclei	Adipose
11	chr6:44537200-44538000	Enhancers	Fetal Lung	lung
12	chr6:44537200-44538000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:44537200-44538200	Enhancers	Fetal Stomach	stomach
14	chr6:44537200-44538200	Weak transcription	Right Ventricle	heart
15	chr6:44537200-44538400	Enhancers	Colon Smooth Muscle	Colon
16	chr6:44537200-44538600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:44537200-44538600	Enhancers	Psoas Muscle	Psoas
18	chr6:44537200-44538600	Enhancers	Right Atrium	heart
19	chr6:44537400-44537800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:44537400-44537800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:44537400-44537800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr6:44537400-44538000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:44537400-44538000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
24	chr6:44537400-44538000	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:44537400-44538000	Enhancers	Brain Hippocampus Middle	brain
26	chr6:44537400-44538000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:44537400-44538000	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:44537400-44538000	Enhancers	HSMM	muscle
29	chr6:44537400-44538200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:44537400-44538200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:44537400-44538200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:44537400-44538200	Enhancers	Osteobl	bone
33	chr6:44537400-44538600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:44537400-44538600	Enhancers	Spleen	Spleen
35	chr6:44537600-44537800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:44537600-44538000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:44537600-44538000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:44537600-44538000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:44537600-44538000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
40	chr6:44537600-44538000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:44537600-44538000	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr6:44537600-44538000	Enhancers	Fetal Brain Male	brain
43	chr6:44537600-44538000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr6:44537600-44538000	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr6:44537600-44538000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:44537600-44538400	Enhancers	Primary hematopoietic stem cells	blood
47	chr6:44537600-44538400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr6:44537600-44538400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links