Variant report

Variant	rs327439
Chromosome Location	chr14:81211589-81211590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10141970	0.90[CHB][hapmap]
rs10142753	0.90[CHB][hapmap]
rs11625199	0.89[CHB][hapmap]
rs12050342	0.89[CHB][hapmap]
rs12437260	0.90[CHB][hapmap]
rs162178	0.86[JPT][hapmap]
rs170596	0.90[CHB][hapmap]
rs172909	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17615020	0.90[CHB][hapmap]
rs1863766	0.89[CHB][hapmap]
rs2010847	0.90[CHB][hapmap]
rs228122	0.90[CHB][hapmap]
rs2288347	0.89[CHB][hapmap]
rs2556611	0.89[CHB][hapmap]
rs2888032	0.89[CHB][hapmap]
rs327435	0.86[JPT][hapmap]
rs327440	0.86[JPT][hapmap]
rs327442	0.86[JPT][hapmap]
rs327443	0.86[JPT][hapmap]
rs327446	0.86[JPT][hapmap]
rs327456	0.83[JPT][hapmap]
rs327457	0.84[JPT][hapmap]
rs327462	0.86[JPT][hapmap]
rs327464	0.90[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs327465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs327467	0.86[JPT][hapmap]
rs327470	0.86[JPT][hapmap]
rs327472	0.86[JPT][hapmap]
rs327477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs328239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs328258	0.86[JPT][hapmap]
rs4903949	0.90[CHB][hapmap]
rs6574608	0.89[CHB][hapmap]
rs6574610	0.90[CHB][hapmap]
rs7157845	0.90[CHB][hapmap]
rs722906	0.90[CHB][hapmap]
rs7493314	0.89[CHB][hapmap]
rs8011273	0.86[JPT][hapmap]
rs8016507	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:81192800-81221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:81193000-81220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
7	chr14:81197400-81212800	Weak transcription	A549	lung
8	chr14:81198200-81220000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
10	chr14:81203800-81229000	Weak transcription	Left Ventricle	heart
11	chr14:81204600-81217600	Strong transcription	Dnd41	blood
12	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:81205200-81222800	Weak transcription	HMEC	breast
14	chr14:81206400-81226800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:81207200-81232600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:81207600-81226200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr14:81207600-81230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:81208000-81215000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:81208600-81211600	Strong transcription	Thymus	Thymus
22	chr14:81208800-81232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:81209400-81227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:81209400-81229000	Weak transcription	Fetal Lung	lung
25	chr14:81209600-81248200	Weak transcription	HSMM	muscle
26	chr14:81210600-81220400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:81210600-81223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:81210600-81230400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:81211000-81211600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:81211000-81211600	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links