Variant report

Variant	rs327477
Chromosome Location	chr14:81240116-81240117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10141970	0.90[CHB][hapmap]
rs10142753	0.90[CHB][hapmap]
rs11625199	0.89[CHB][hapmap]
rs12050342	0.89[CHB][hapmap]
rs12437260	0.90[CHB][hapmap]
rs162178	0.86[JPT][hapmap]
rs170596	0.90[CHB][hapmap]
rs172909	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17615020	0.90[CHB][hapmap]
rs1863766	0.89[CHB][hapmap]
rs2010847	0.90[CHB][hapmap]
rs228122	0.90[CHB][hapmap]
rs2288347	0.89[CHB][hapmap]
rs2556611	0.89[CHB][hapmap]
rs2888032	0.89[CHB][hapmap]
rs327435	0.86[JPT][hapmap]
rs327439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs327440	0.86[JPT][hapmap]
rs327442	0.86[JPT][hapmap]
rs327443	0.86[JPT][hapmap]
rs327446	0.86[JPT][hapmap]
rs327456	0.83[JPT][hapmap]
rs327457	0.84[JPT][hapmap]
rs327462	0.86[JPT][hapmap]
rs327464	0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs327465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs327467	0.86[JPT][hapmap]
rs327470	0.86[JPT][hapmap]
rs327472	0.86[JPT][hapmap]
rs328239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs328258	0.86[JPT][hapmap]
rs4903949	0.90[CHB][hapmap]
rs6574608	0.89[CHB][hapmap]
rs6574610	0.90[CHB][hapmap]
rs7157845	0.90[CHB][hapmap]
rs722906	0.90[CHB][hapmap]
rs7493314	0.89[CHB][hapmap]
rs8011273	0.86[JPT][hapmap]
rs8016507	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:81209600-81248200	Weak transcription	HSMM	muscle
7	chr14:81222400-81260000	Weak transcription	Fetal Brain Female	brain
8	chr14:81223200-81250800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:81227000-81260800	Weak transcription	NH-A	brain
10	chr14:81227400-81258000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:81228200-81240800	Weak transcription	Fetal Thymus	thymus
12	chr14:81231200-81251400	Weak transcription	A549	lung
13	chr14:81232000-81251200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:81232400-81260800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr14:81233600-81246200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:81235200-81253600	Weak transcription	HMEC	breast
17	chr14:81235400-81266600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:81236600-81251200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr14:81236800-81244000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:81237200-81248400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:81237400-81260600	Weak transcription	Right Ventricle	heart
22	chr14:81237600-81255800	Weak transcription	NHLF	lung
23	chr14:81237600-81264600	Weak transcription	Psoas Muscle	Psoas
24	chr14:81238000-81267000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:81238400-81240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:81238800-81251400	Weak transcription	Ovary	ovary
27	chr14:81239200-81250800	Weak transcription	Aorta	Aorta
28	chr14:81239200-81251000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:81239200-81258800	Weak transcription	Adipose Nuclei	Adipose
30	chr14:81239400-81240600	Weak transcription	Dnd41	blood
31	chr14:81239400-81243400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:81239400-81243600	Weak transcription	Thymus	Thymus
33	chr14:81239400-81250800	Weak transcription	Left Ventricle	heart
34	chr14:81239400-81257800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:81239400-81260200	Weak transcription	NHEK	skin

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