Variant report

Variant	rs4903949
Chromosome Location	chr14:81392513-81392514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10133034	0.87[JPT][hapmap]
rs10135084	0.86[JPT][hapmap]
rs10137041	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10141970	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10142753	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144692	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1016699	0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1038523	0.87[JPT][hapmap]
rs11625199	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11627934	0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1197467	0.87[JPT][hapmap]
rs1197474	0.87[JPT][hapmap]
rs12050151	0.81[JPT][hapmap]
rs12050342	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12050416	0.83[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs12433134	0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12434318	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12437260	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12896436	0.81[JPT][hapmap]
rs162171	0.87[JPT][hapmap]
rs162174	0.87[JPT][hapmap]
rs170595	0.87[JPT][hapmap]
rs170596	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17111256	0.81[JPT][hapmap]
rs17615020	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863765	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2010847	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2059719	0.81[JPT][hapmap]
rs2162547	0.81[JPT][hapmap]
rs228119	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs228122	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228126	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs228128	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2284722	0.81[JPT][hapmap]
rs2288347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2371420	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371421	0.82[ASN][1000 genomes]
rs2371456	0.86[ASN][1000 genomes]
rs2556603	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556606	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556607	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2556608	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556610	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556611	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556612	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2556614	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2619661	0.87[JPT][hapmap]
rs28850656	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2888032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs327423	0.87[JPT][hapmap]
rs327424	0.87[JPT][hapmap]
rs327428	0.87[JPT][hapmap]
rs327429	0.87[JPT][hapmap]
rs327434	0.87[JPT][hapmap]
rs327439	0.90[CHB][hapmap]
rs327452	0.87[JPT][hapmap]
rs327454	0.87[JPT][hapmap]
rs327464	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs327465	0.89[CHB][hapmap]
rs327477	0.90[CHB][hapmap]
rs328206	0.87[JPT][hapmap]
rs328212	0.87[JPT][hapmap]
rs328213	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs328239	0.89[CHB][hapmap]
rs4016442	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899780	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4899781	0.84[ASN][1000 genomes]
rs4903943	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903945	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903946	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903947	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58699962	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574608	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574609	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6574610	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574611	0.84[ASN][1000 genomes]
rs7140452	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7147306	0.83[ASN][1000 genomes]
rs7156572	0.85[JPT][hapmap]
rs7157845	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7158936	0.87[JPT][hapmap]
rs722906	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7493314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs759918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs759919	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs768359	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs8008366	0.87[JPT][hapmap]
rs8016507	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017038	0.84[ASN][1000 genomes]
rs8017949	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323694	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81351400-81398400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81357800-81392600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:81358000-81396600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:81359400-81406000	Weak transcription	A549	lung
5	chr14:81359800-81396200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:81359800-81407200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:81360200-81393800	Weak transcription	HMEC	breast
8	chr14:81362200-81392600	Weak transcription	NH-A	brain
9	chr14:81362200-81392800	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:81364400-81395800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:81364400-81395800	Weak transcription	GM12878-XiMat	blood
12	chr14:81365200-81393000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:81369600-81397200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:81370400-81393600	Weak transcription	NHEK	skin
15	chr14:81371600-81392800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:81373600-81392600	Weak transcription	Esophagus	oesophagus
17	chr14:81375400-81407600	Weak transcription	Gastric	stomach
18	chr14:81375800-81392800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:81379400-81407400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:81380000-81392600	Weak transcription	Right Ventricle	heart
21	chr14:81380800-81392800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:81382600-81392600	Weak transcription	Left Ventricle	heart
23	chr14:81382600-81393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:81382600-81406400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81382800-81396000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr14:81382800-81396200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr14:81382800-81396800	Weak transcription	Primary B cells from cord blood	blood
28	chr14:81382800-81397200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:81382800-81397200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:81383400-81393600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:81384600-81392800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:81387800-81407200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:81388200-81393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:81390000-81405000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:81390000-81407200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr14:81391000-81392600	Weak transcription	Fetal Thymus	thymus
37	chr14:81391200-81392600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr14:81391200-81393600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr14:81391800-81393000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr14:81392000-81392600	ZNF genes & repeats	Fetal Stomach	stomach
41	chr14:81392000-81392800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr14:81392000-81394200	Genic enhancers	Dnd41	blood
43	chr14:81392200-81392600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:81392200-81392600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:81392200-81393200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:81392200-81393600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:81392200-81394200	Strong transcription	Thymus	Thymus
48	chr14:81392200-81394400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:81392200-81407200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:81392400-81393400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links