Variant report

Variant	rs329387
Chromosome Location	chr3:137904853-137904854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13065895	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs3773766	0.82[CEU][hapmap]
rs4678405	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6778511	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs7612622	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7631734	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs774800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs774801	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs939453	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9822008	0.81[EUR][1000 genomes]
rs9842193	0.80[EUR][1000 genomes]
rs9853581	0.83[EUR][1000 genomes]
rs9862439	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2762347	chr3:137851198-137910007	Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv998106	chr3:137851198-137934610	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137893800-137905600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:137894400-137905200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:137902800-137905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:137903600-137905600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:137903800-137905200	Enhancers	NHEK	skin
6	chr3:137903800-137905400	Enhancers	HMEC	breast
7	chr3:137904000-137905000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:137904000-137905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:137904000-137905200	Enhancers	HepG2	liver
10	chr3:137904000-137905200	Enhancers	K562	blood
11	chr3:137904200-137905000	Weak transcription	Stomach Mucosa	stomach
12	chr3:137904200-137905200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:137904200-137905200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:137904200-137905200	Weak transcription	Gastric	stomach
15	chr3:137904800-137905000	Enhancers	A549	lung
16	chr3:137904800-137905000	Enhancers	Hela-S3	cervix
17	chr3:137904800-137905200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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