Variant report

Variant	rs3773766
Chromosome Location	chr3:137952315-137952316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:137951731..137953338-chr3:137963904..137965861,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs329387	0.82[CEU][hapmap]
rs4678405	0.92[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6778511	0.81[CEU][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612622	0.93[ASN][1000 genomes]
rs7631734	0.81[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs774800	0.81[CEU][hapmap]
rs774801	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs939453	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9822008	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842193	0.93[ASN][1000 genomes]
rs9853581	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9862439	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137908400-137956200	Weak transcription	A549	lung
2	chr3:137919200-137964800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:137940200-137970600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:137940400-137953200	Strong transcription	HSMM	muscle
5	chr3:137940400-137969200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:137940400-137970600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:137940600-137952400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:137940600-137971200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:137941000-137952400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:137941000-137968200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:137941000-137968600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:137941600-137957400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr3:137941600-137962400	Strong transcription	Liver	Liver
14	chr3:137941600-137967200	Strong transcription	Dnd41	blood
15	chr3:137941600-137968000	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr3:137941800-137952400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr3:137941800-137966800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr3:137942000-137962000	Strong transcription	Primary B cells from cord blood	blood
19	chr3:137942000-137968000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:137942200-137952400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr3:137942200-137952600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:137942200-137966400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:137942200-137967800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:137942400-137958800	Strong transcription	Adipose Nuclei	Adipose
25	chr3:137942400-137970600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:137942600-137952400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:137942600-137965800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:137942600-137968600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:137942600-137970600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr3:137942800-137993400	Weak transcription	Fetal Brain Male	brain
31	chr3:137943200-137954800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:137943600-137953000	Weak transcription	Small Intestine	intestine
33	chr3:137943600-137955000	Weak transcription	Stomach Mucosa	stomach
34	chr3:137943600-137957200	Weak transcription	Brain Substantia Nigra	brain
35	chr3:137943600-137992000	Weak transcription	Gastric	stomach
36	chr3:137944200-137992000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:137944600-137971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:137944800-137954600	Weak transcription	Esophagus	oesophagus
39	chr3:137944800-137967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:137944800-137984400	Weak transcription	Spleen	Spleen
41	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:137945000-137976200	Weak transcription	Psoas Muscle	Psoas
43	chr3:137945200-137962400	Weak transcription	Brain Germinal Matrix	brain
44	chr3:137945200-137964000	Weak transcription	HSMMtube	muscle
45	chr3:137945400-137954400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:137946200-137955000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:137946200-137958600	Weak transcription	Fetal Kidney	kidney
48	chr3:137946200-137991800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:137946400-137954800	Weak transcription	Brain Anterior Caudate	brain
50	chr3:137946600-137952800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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