Variant report

Variant	rs7631734
Chromosome Location	chr3:137970907-137970908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137892054..137895702-chr3:137968027..137972024,3	K562	blood:
2	chr3:137889293..137890860-chr3:137969954..137972677,2	K562	blood:
3	chr3:137969464..137971797-chr3:137972067..137975093,3	K562	blood:

Variant related genes	Relation type
ENSG00000138231	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13065895	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs329387	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3773766	0.81[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4678405	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778511	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7612622	0.82[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs774800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs774801	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs939453	0.93[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9822008	0.82[EUR][1000 genomes]
rs9842193	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9853581	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9862439	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137940600-137971200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:137942800-137993400	Weak transcription	Fetal Brain Male	brain
3	chr3:137943600-137992000	Weak transcription	Gastric	stomach
4	chr3:137944200-137992000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:137944600-137971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:137944800-137984400	Weak transcription	Spleen	Spleen
7	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:137945000-137976200	Weak transcription	Psoas Muscle	Psoas
9	chr3:137946200-137991800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:137950000-137972400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:137950800-137992000	Weak transcription	NHLF	lung
12	chr3:137951000-137977600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:137951200-137992000	Weak transcription	Pancreas	Pancrea
14	chr3:137952200-137984400	Weak transcription	Aorta	Aorta
15	chr3:137952200-137992000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:137952400-137984400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:137953600-137992000	Weak transcription	Colonic Mucosa	Colon
18	chr3:137954600-138014400	Weak transcription	NHDF-Ad	bronchial
19	chr3:137955600-137977600	Weak transcription	Lung	lung
20	chr3:137955600-137984600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
22	chr3:137956600-137990200	Weak transcription	A549	lung
23	chr3:137957000-137982600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:137957600-137991800	Weak transcription	Brain Substantia Nigra	brain
25	chr3:137958000-137993200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:137959400-137983600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:137961400-137982200	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:137961400-137982800	Weak transcription	NH-A	brain
29	chr3:137961400-137984200	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:137962000-137990200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:137962000-137992000	Weak transcription	Fetal Kidney	kidney
32	chr3:137962200-137971600	Weak transcription	HMEC	breast
33	chr3:137962200-137982400	Weak transcription	Ovary	ovary
34	chr3:137964200-137977200	Weak transcription	Fetal Stomach	stomach
35	chr3:137964200-137982200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:137964200-137983600	Weak transcription	Fetal Brain Female	brain
37	chr3:137964200-137983800	Weak transcription	Right Ventricle	heart
38	chr3:137964200-137984400	Weak transcription	Thymus	Thymus
39	chr3:137964200-137992000	Weak transcription	Hela-S3	cervix
40	chr3:137964400-137983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:137964800-137977800	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:137964800-137979200	Weak transcription	HSMMtube	muscle
43	chr3:137964800-137992000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:137964800-137992000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:137964800-137992000	Weak transcription	Esophagus	oesophagus
46	chr3:137964800-138003800	Weak transcription	K562	blood
47	chr3:137965000-137973800	Weak transcription	Osteobl	bone
48	chr3:137965000-137982400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr3:137965000-137983000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:137965000-137984400	Weak transcription	Brain Anterior Caudate	brain

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