The 2.0 version of rSNPBase

Variant report

Variant rs332818
Chromosome Location chr1:61679283-61679284
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61665000-61683800 Weak transcription Brain Germinal Matrix brain
2 chr1:61669200-61681400 Weak transcription Stomach Smooth Muscle stomach
3 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
4 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
5 chr1:61669400-61679400 Weak transcription Pancreas Pancrea
6 chr1:61669400-61683800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:61670400-61681400 Weak transcription Ovary ovary
12 chr1:61670800-61680400 Weak transcription Fetal Intestine Small intestine
13 chr1:61671200-61683200 Weak transcription K562 blood
14 chr1:61674200-61686200 Weak transcription Brain Cingulate Gyrus brain
15 chr1:61674400-61679800 Weak transcription Fetal Lung lung
16 chr1:61674800-61683800 Weak transcription Psoas Muscle Psoas
17 chr1:61674800-61685000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:61676400-61680600 Weak transcription A549 lung
19 chr1:61676600-61685800 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:61676600-61690000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:61676800-61679800 Weak transcription Brain Hippocampus Middle brain
22 chr1:61676800-61681400 Weak transcription Colon Smooth Muscle Colon
23 chr1:61676800-61681400 Weak transcription Rectal Smooth Muscle rectum
24 chr1:61676800-61681400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:61677000-61681400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:61677600-61692400 Weak transcription Esophagus oesophagus
27 chr1:61677800-61685600 Weak transcription Fetal Stomach stomach
28 chr1:61678400-61679600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:61678400-61679600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:61678400-61680000 Enhancers Left Ventricle heart
31 chr1:61678400-61680000 Enhancers Right Ventricle heart
32 chr1:61678400-61682000 Enhancers Adipose Nuclei Adipose
33 chr1:61678600-61679600 Weak transcription Lung lung
34 chr1:61678600-61680000 Strong transcription Fetal Muscle Trunk muscle
35 chr1:61678600-61682000 Enhancers Fetal Heart heart
36 chr1:61678800-61679400 Weak transcription Aorta Aorta
37 chr1:61678800-61681400 Weak transcription Brain Anterior Caudate brain
38 chr1:61678800-61681600 Weak transcription Brain Substantia Nigra brain
39 chr1:61679000-61679800 Enhancers Fetal Brain Male brain
40 chr1:61679000-61681200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:61679200-61679600 Active TSS Liver Liver
42 chr1:61679200-61679600 Genic enhancers HepG2 liver
43 chr1:61679200-61679800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:61679200-61679800 Enhancers Right Atrium heart
45 chr1:61679200-61692200 Weak transcription NHEK skin

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Last update: Aug 31, 2015