The 2.0 version of rSNPBase

Variant report

Variant rs332819
Chromosome Location chr1:61678557-61678558
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61664800-61679200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:61665000-61683800 Weak transcription Brain Germinal Matrix brain
3 chr1:61669200-61681400 Weak transcription Stomach Smooth Muscle stomach
4 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
5 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
6 chr1:61669400-61679400 Weak transcription Pancreas Pancrea
7 chr1:61669400-61683800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:61670400-61681400 Weak transcription Ovary ovary
13 chr1:61670800-61680400 Weak transcription Fetal Intestine Small intestine
14 chr1:61671200-61683200 Weak transcription K562 blood
15 chr1:61674000-61679200 Weak transcription HepG2 liver
16 chr1:61674200-61686200 Weak transcription Brain Cingulate Gyrus brain
17 chr1:61674400-61679800 Weak transcription Fetal Lung lung
18 chr1:61674800-61683800 Weak transcription Psoas Muscle Psoas
19 chr1:61674800-61685000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:61676400-61680600 Weak transcription A549 lung
21 chr1:61676600-61685800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:61676600-61690000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:61676800-61679800 Weak transcription Brain Hippocampus Middle brain
24 chr1:61676800-61681400 Weak transcription Colon Smooth Muscle Colon
25 chr1:61676800-61681400 Weak transcription Rectal Smooth Muscle rectum
26 chr1:61676800-61681400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:61677000-61681400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:61677600-61678600 Weak transcription Right Atrium heart
29 chr1:61677600-61692400 Weak transcription Esophagus oesophagus
30 chr1:61677800-61685600 Weak transcription Fetal Stomach stomach
31 chr1:61678200-61679200 Enhancers Liver Liver
32 chr1:61678400-61678600 Enhancers Fetal Brain Male brain
33 chr1:61678400-61678600 Genic enhancers Fetal Muscle Trunk muscle
34 chr1:61678400-61678600 Enhancers Lung lung
35 chr1:61678400-61678800 Enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr1:61678400-61678800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:61678400-61678800 Enhancers Aorta Aorta
38 chr1:61678400-61678800 Enhancers Brain Anterior Caudate brain
39 chr1:61678400-61678800 Enhancers Brain Substantia Nigra brain
40 chr1:61678400-61679200 Strong transcription NHEK skin
41 chr1:61678400-61679600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:61678400-61679600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:61678400-61680000 Enhancers Left Ventricle heart
44 chr1:61678400-61680000 Enhancers Right Ventricle heart
45 chr1:61678400-61682000 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015