Variant report

Variant	rs332821
Chromosome Location	chr1:61674754-61674755
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61515516..61517194-chr1:61672178..61675085,2	K562	blood:
2	chr1:61653304..61654875-chr1:61673178..61675830,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12118221	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs182823	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs332819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs332822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs332824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs332825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332826	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332833	0.84[CEU][hapmap]
rs459997	0.99[ASN][1000 genomes]
rs464113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61664600-61678400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61664800-61679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:61665000-61683800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:61669200-61681400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:61669200-61685800	Weak transcription	Fetal Brain Female	brain
6	chr1:61669200-61692400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:61669400-61676400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:61669400-61678400	Weak transcription	NHEK	skin
9	chr1:61669400-61679400	Weak transcription	Pancreas	Pancrea
10	chr1:61669400-61683800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:61669400-61691800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:61669600-61675800	Weak transcription	Brain Angular Gyrus	brain
13	chr1:61669600-61685800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:61669600-61686000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:61669600-61692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:61669800-61675800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:61669800-61678400	Weak transcription	Adipose Nuclei	Adipose
18	chr1:61670000-61677400	Weak transcription	Fetal Stomach	stomach
19	chr1:61670400-61681400	Weak transcription	Ovary	ovary
20	chr1:61670800-61680400	Weak transcription	Fetal Intestine Small	intestine
21	chr1:61671200-61683200	Weak transcription	K562	blood
22	chr1:61672000-61674800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:61672400-61675200	Enhancers	Brain Anterior Caudate	brain
24	chr1:61672600-61674800	Enhancers	Liver	Liver
25	chr1:61673000-61675000	Enhancers	Brain Hippocampus Middle	brain
26	chr1:61673400-61674800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:61673400-61675200	Enhancers	Colon Smooth Muscle	Colon
28	chr1:61673600-61674800	Enhancers	Brain Substantia Nigra	brain
29	chr1:61674000-61674800	Enhancers	Fetal Brain Male	brain
30	chr1:61674000-61678400	Weak transcription	Left Ventricle	heart
31	chr1:61674000-61679200	Weak transcription	HepG2	liver
32	chr1:61674200-61675800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:61674200-61686200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:61674400-61674800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:61674400-61675400	Enhancers	Aorta	Aorta
36	chr1:61674400-61679800	Weak transcription	Fetal Lung	lung
37	chr1:61674600-61674800	Enhancers	Psoas Muscle	Psoas
38	chr1:61674600-61675600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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