The 2.0 version of rSNPBase

Variant report

Variant rs332822
Chromosome Location chr1:61674313-61674314
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61664600-61678400 Weak transcription Fetal Muscle Trunk muscle
2 chr1:61664800-61679200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:61665000-61683800 Weak transcription Brain Germinal Matrix brain
4 chr1:61669200-61681400 Weak transcription Stomach Smooth Muscle stomach
5 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
6 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
7 chr1:61669400-61674400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr1:61669400-61676400 Weak transcription Rectal Smooth Muscle rectum
9 chr1:61669400-61678400 Weak transcription NHEK skin
10 chr1:61669400-61679400 Weak transcription Pancreas Pancrea
11 chr1:61669400-61683800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:61669600-61675800 Weak transcription Brain Angular Gyrus brain
14 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:61669800-61674600 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr1:61669800-61675800 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr1:61669800-61678400 Weak transcription Adipose Nuclei Adipose
20 chr1:61670000-61677400 Weak transcription Fetal Stomach stomach
21 chr1:61670400-61681400 Weak transcription Ovary ovary
22 chr1:61670800-61680400 Weak transcription Fetal Intestine Small intestine
23 chr1:61671200-61683200 Weak transcription K562 blood
24 chr1:61672000-61674800 Enhancers Cortex derived primary cultured neurospheres brain
25 chr1:61672400-61675200 Enhancers Brain Anterior Caudate brain
26 chr1:61672600-61674800 Enhancers Liver Liver
27 chr1:61673000-61675000 Enhancers Brain Hippocampus Middle brain
28 chr1:61673400-61674800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:61673400-61675200 Enhancers Colon Smooth Muscle Colon
30 chr1:61673600-61674400 Enhancers Fetal Lung lung
31 chr1:61673600-61674800 Enhancers Brain Substantia Nigra brain
32 chr1:61674000-61674600 Weak transcription Psoas Muscle Psoas
33 chr1:61674000-61674800 Enhancers Fetal Brain Male brain
34 chr1:61674000-61678400 Weak transcription Left Ventricle heart
35 chr1:61674000-61679200 Weak transcription HepG2 liver
36 chr1:61674200-61674400 Weak transcription Aorta Aorta
37 chr1:61674200-61674400 Enhancers HUVEC blood vessel
38 chr1:61674200-61675800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr1:61674200-61686200 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015