Variant report
Variant | rs334128 |
---|---|
Chromosome Location | chr2:179039491-179039492 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000180228 | Chromatin interaction |
ENSG00000204311 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10187205 | 0.85[ASN][1000 genomes] |
rs10930823 | 0.81[ASN][1000 genomes] |
rs12471750 | 0.87[ASN][1000 genomes] |
rs12693155 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs13013858 | 0.82[ASN][1000 genomes] |
rs13389850 | 0.92[ASN][1000 genomes] |
rs17638592 | 0.96[ASN][1000 genomes] |
rs186736 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs232042 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs2366365 | 0.91[ASN][1000 genomes] |
rs3099472 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs334079 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs334080 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs334081 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs334092 | 0.91[ASN][1000 genomes] |
rs334094 | 0.94[ASN][1000 genomes] |
rs334102 | 0.91[ASN][1000 genomes] |
rs334103 | 0.91[ASN][1000 genomes] |
rs334115 | 0.92[ASN][1000 genomes] |
rs334116 | 0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs334117 | 0.91[ASN][1000 genomes] |
rs334122 | 0.91[ASN][1000 genomes] |
rs334125 | 0.91[AFR][1000 genomes];0.85[ASN][1000 genomes] |
rs334126 | 0.94[ASN][1000 genomes] |
rs334132 | 0.94[ASN][1000 genomes] |
rs334133 | 0.92[ASN][1000 genomes] |
rs35480930 | 0.80[ASN][1000 genomes] |
rs407528 | 0.82[ASN][1000 genomes] |
rs437385 | 0.82[ASN][1000 genomes] |
rs437523 | 0.94[ASN][1000 genomes] |
rs4894001 | 0.86[ASN][1000 genomes] |
rs7589907 | 0.82[ASN][1000 genomes] |
rs7591476 | 0.86[ASN][1000 genomes] |
rs7595650 | 0.91[ASN][1000 genomes] |
rs930191 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1009312 | chr2:178924318-179215566 | Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv536057 | chr2:178924318-179215566 | Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv875452 | chr2:178963445-179167766 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv875453 | chr2:179022751-179060313 | Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv875454 | chr2:179022751-179066443 | Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:179037000-179056600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |