Variant report

Variant	rs930191
Chromosome Location	chr2:179051952-179051953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs101266	0.81[JPT][hapmap]
rs10197166	0.87[JPT][hapmap]
rs10930823	0.89[ASN][1000 genomes]
rs10930827	0.87[JPT][hapmap]
rs12185670	0.94[JPT][hapmap]
rs12471750	0.97[ASN][1000 genomes]
rs12693155	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13013858	0.90[ASN][1000 genomes]
rs13403689	0.81[JPT][hapmap]
rs147180	0.81[JPT][hapmap]
rs17638592	0.83[ASN][1000 genomes]
rs186736	0.88[ASW][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs232042	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366157	0.87[JPT][hapmap]
rs3099472	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs333992	0.87[JPT][hapmap]
rs333993	0.87[JPT][hapmap]
rs333995	0.86[JPT][hapmap]
rs333997	0.81[JPT][hapmap]
rs334002	0.81[JPT][hapmap]
rs334013	0.81[JPT][hapmap]
rs334014	0.81[JPT][hapmap]
rs334024	0.87[JPT][hapmap]
rs334028	0.86[JPT][hapmap]
rs334035	0.87[JPT][hapmap]
rs334037	0.87[JPT][hapmap]
rs334079	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs334080	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs334081	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334094	0.81[ASN][1000 genomes]
rs334102	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs334103	0.80[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs334110	0.81[JPT][hapmap]
rs334115	0.83[ASN][1000 genomes]
rs334116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs334117	0.82[ASN][1000 genomes]
rs334122	0.82[ASN][1000 genomes]
rs334125	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs334126	0.81[ASN][1000 genomes]
rs334128	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs334132	0.81[ASN][1000 genomes]
rs35480930	0.88[ASN][1000 genomes]
rs407528	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs437385	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs437523	0.81[ASN][1000 genomes]
rs4894001	0.99[ASN][1000 genomes]
rs551368	0.81[JPT][hapmap]
rs6719178	0.87[JPT][hapmap]
rs7419749	0.87[JPT][hapmap]
rs7581504	0.81[JPT][hapmap]
rs7589907	0.90[ASN][1000 genomes]
rs7591476	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989738	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875453	chr2:179022751-179060313	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875454	chr2:179022751-179066443	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs930191	FKBP7	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179037000-179056600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links