Variant report

Variant	rs17638592
Chromosome Location	chr2:179017996-179017997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10187205	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930823	0.82[ASN][1000 genomes]
rs10930827	0.81[JPT][hapmap]
rs12185670	0.88[JPT][hapmap]
rs12471750	0.84[ASN][1000 genomes]
rs12693155	0.89[ASN][1000 genomes]
rs13013858	0.82[ASN][1000 genomes]
rs13389850	0.94[ASN][1000 genomes]
rs186736	0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.93[ASN][1000 genomes]
rs232042	0.83[ASN][1000 genomes]
rs2366157	0.80[JPT][hapmap]
rs2366365	0.91[ASN][1000 genomes]
rs3099472	0.81[ASN][1000 genomes]
rs333992	0.81[JPT][hapmap]
rs333993	0.81[JPT][hapmap]
rs333995	0.86[JPT][hapmap]
rs333996	0.81[JPT][hapmap]
rs334005	0.81[JPT][hapmap]
rs334007	0.81[JPT][hapmap]
rs334017	0.81[JPT][hapmap]
rs334024	0.81[JPT][hapmap]
rs334035	0.80[JPT][hapmap]
rs334040	0.81[JPT][hapmap]
rs334042	0.81[JPT][hapmap]
rs334045	0.81[JPT][hapmap]
rs334079	0.94[ASN][1000 genomes]
rs334080	0.94[ASN][1000 genomes]
rs334081	0.83[ASN][1000 genomes]
rs334092	0.93[ASN][1000 genomes]
rs334094	0.94[ASN][1000 genomes]
rs334102	0.89[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs334103	0.88[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs334110	0.87[JPT][hapmap]
rs334115	0.92[ASN][1000 genomes]
rs334116	0.81[ASN][1000 genomes]
rs334117	0.91[ASN][1000 genomes]
rs334122	0.91[ASN][1000 genomes]
rs334125	0.81[ASN][1000 genomes]
rs334126	0.94[ASN][1000 genomes]
rs334128	0.96[ASN][1000 genomes]
rs334132	0.94[ASN][1000 genomes]
rs334133	0.92[ASN][1000 genomes]
rs407528	0.82[ASN][1000 genomes]
rs437385	0.82[ASN][1000 genomes]
rs437523	0.94[ASN][1000 genomes]
rs4894001	0.82[ASN][1000 genomes]
rs6719178	0.80[JPT][hapmap]
rs7419749	0.81[JPT][hapmap]
rs7581504	0.87[JPT][hapmap]
rs7589907	0.82[ASN][1000 genomes]
rs7591476	0.82[ASN][1000 genomes]
rs7595650	0.93[ASN][1000 genomes]
rs930191	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17638592	GPR155	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179016200-179019200	Enhancers	Fetal Intestine Large	intestine
2	chr2:179016400-179018600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr2:179016800-179018200	Enhancers	HepG2	liver
4	chr2:179016800-179018600	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:179016800-179019400	Enhancers	Fetal Intestine Small	intestine
6	chr2:179017000-179018400	Enhancers	Fetal Lung	lung
7	chr2:179017000-179018400	Weak transcription	Gastric	stomach
8	chr2:179017200-179018000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr2:179017600-179018200	Enhancers	Liver	Liver
10	chr2:179017600-179018200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:179017800-179018000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:179017800-179018000	Enhancers	Fetal Kidney	kidney

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