Variant report

Variant	rs338861
Chromosome Location	chr5:111875824-111875825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10040932	0.92[ASN][1000 genomes]
rs10055490	0.92[ASN][1000 genomes]
rs13163826	0.89[ASN][1000 genomes]
rs163445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs338840	1.00[CEU][hapmap]
rs338860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338866	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs338868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3934641	0.92[ASN][1000 genomes]
rs6421839	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6421840	0.92[ASN][1000 genomes]
rs6421841	0.92[ASN][1000 genomes]
rs6421842	0.92[ASN][1000 genomes]
rs6421843	0.92[ASN][1000 genomes]
rs6594608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6594609	0.90[ASN][1000 genomes]
rs6594610	0.92[ASN][1000 genomes]
rs6594611	0.92[ASN][1000 genomes]
rs6594612	0.92[ASN][1000 genomes]
rs7443366	0.89[ASN][1000 genomes]
rs7449028	0.91[ASN][1000 genomes]
rs7702372	0.92[ASN][1000 genomes]
rs7711803	0.89[ASN][1000 genomes]
rs7721904	0.92[ASN][1000 genomes]
rs7723866	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111869600-111880000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:111875400-111876000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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