Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111881836..111883481-chr5:112041986..112044748,2	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10040932	0.93[ASN][1000 genomes]
rs10055490	0.92[ASN][1000 genomes]
rs13163826	0.89[ASN][1000 genomes]
rs163445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs163447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs338840	1.00[CEU][hapmap]
rs338860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338862	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs338866	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs338868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3934641	0.92[ASN][1000 genomes]
rs6421839	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6421840	0.92[ASN][1000 genomes]
rs6421841	0.92[ASN][1000 genomes]
rs6421842	0.92[ASN][1000 genomes]
rs6421843	0.92[ASN][1000 genomes]
rs6594609	0.91[ASN][1000 genomes]
rs6594610	0.92[ASN][1000 genomes]
rs6594611	0.92[ASN][1000 genomes]
rs6594612	0.92[ASN][1000 genomes]
rs7443366	0.89[ASN][1000 genomes]
rs7449028	0.92[ASN][1000 genomes]
rs7702372	0.92[ASN][1000 genomes]
rs7711803	0.89[ASN][1000 genomes]
rs7721904	0.92[ASN][1000 genomes]
rs7723866	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111882400-111883600	Enhancers	K562	blood
2	chr5:111882600-111883800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:111882600-111884400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:111882800-111885600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:111883000-111883600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr5:111883000-111884000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:111883000-111884600	Enhancers	HSMMtube	muscle
8	chr5:111883000-111884800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:111883200-111884200	Enhancers	Right Atrium	heart
10	chr5:111883400-111884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:111883400-111885000	Enhancers	NH-A	brain

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