Variant report
| Variant | rs338868 |
|---|---|
| Chromosome Location | chr5:111878099-111878100 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10040932 | 0.93[ASN][1000 genomes] |
| rs10055490 | 0.92[ASN][1000 genomes] |
| rs13163826 | 0.89[ASN][1000 genomes] |
| rs163445 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs163447 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs338840 | 1.00[CEU][hapmap] |
| rs338860 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs338861 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs338862 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs338865 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs338866 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3934641 | 0.92[ASN][1000 genomes] |
| rs6421839 | 0.89[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6421840 | 0.92[ASN][1000 genomes] |
| rs6421841 | 0.92[ASN][1000 genomes] |
| rs6421842 | 0.92[ASN][1000 genomes] |
| rs6421843 | 0.92[ASN][1000 genomes] |
| rs6594608 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6594609 | 0.91[ASN][1000 genomes] |
| rs6594610 | 0.92[ASN][1000 genomes] |
| rs6594611 | 0.92[ASN][1000 genomes] |
| rs6594612 | 0.92[ASN][1000 genomes] |
| rs7443366 | 0.89[ASN][1000 genomes] |
| rs7449028 | 0.92[ASN][1000 genomes] |
| rs7702372 | 0.92[ASN][1000 genomes] |
| rs7711803 | 0.89[ASN][1000 genomes] |
| rs7721904 | 0.92[ASN][1000 genomes] |
| rs7723866 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv882715 | chr5:111836278-111894491 | Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 3 | nsv882716 | chr5:111848890-111894491 | Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111869600-111880000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
