Variant report

Variant	rs340033
Chromosome Location	chr5:145189981-145189982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145180015..145181586-chr5:145188813..145191232,2	K562	blood:
2	chr5:145134194..145136208-chr5:145188501..145190902,2	K562	blood:
3	chr5:145188483..145191045-chr5:145213334..145215206,2	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11745319	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1654166	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs189294	0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs1985684	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2009683	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2569010	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636306	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs340048	0.94[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35774662	0.91[EUR][1000 genomes]
rs371480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs385175	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs386547	0.93[EUR][1000 genomes]
rs387269	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs417215	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs421289	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs421310	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs430811	0.93[EUR][1000 genomes]
rs4334932	0.91[EUR][1000 genomes]
rs436465	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs440939	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs441076	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs442708	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs443033	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4516907	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4518453	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs453355	0.84[EUR][1000 genomes]
rs453811	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs620323	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs624380	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883479	0.85[EUR][1000 genomes]
rs9716435	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
2	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
5	chr5:145162800-145198200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:145167800-145191600	Weak transcription	Left Ventricle	heart
9	chr5:145167800-145194800	Weak transcription	Fetal Lung	lung
10	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:145168200-145191200	Weak transcription	Fetal Heart	heart
12	chr5:145170200-145195400	Weak transcription	HepG2	liver
13	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:145172800-145191000	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:145172800-145196200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
17	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:145177200-145209200	Weak transcription	NH-A	brain
22	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:145177600-145191600	Weak transcription	HUVEC	blood vessel
24	chr5:145179200-145191000	Weak transcription	Gastric	stomach
25	chr5:145179200-145192200	Weak transcription	Lung	lung
26	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
27	chr5:145179400-145191000	Weak transcription	Ovary	ovary
28	chr5:145179400-145193000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
30	chr5:145180600-145191600	Weak transcription	Adipose Nuclei	Adipose
31	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
32	chr5:145183400-145197200	Weak transcription	HMEC	breast
33	chr5:145183600-145197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
35	chr5:145183800-145195200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr5:145184400-145192600	Strong transcription	Fetal Intestine Large	intestine
37	chr5:145184400-145193400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr5:145185400-145194400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:145185600-145194600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:145185800-145202400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:145186400-145194000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:145186800-145191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:145187000-145209200	Weak transcription	A549	lung
44	chr5:145187200-145192200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:145187400-145197200	Weak transcription	Aorta	Aorta
46	chr5:145188400-145194600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:145189000-145192000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr5:145189200-145190800	Weak transcription	Fetal Intestine Small	intestine
49	chr5:145189200-145190800	Weak transcription	Fetal Stomach	stomach
50	chr5:145189200-145200000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links