Variant report

Variant	rs440939
Chromosome Location	chr5:145200479-145200480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145200389..145203270-chr5:145232489..145236140,3	K562	blood:
2	chr5:145200389..145201960-chr5:145232489..145234777,2	K562	blood:
3	chr5:145196325..145201052-chr5:145202537..145206450,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11745319	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1654166	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs189294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1985684	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2009683	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2569010	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2636306	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs340033	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs340048	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35774662	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371480	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs385175	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs386547	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs417215	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs421289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs421310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430811	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334932	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs436465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs441076	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs442708	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs443033	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4516907	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4518453	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs453811	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs620323	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624380	0.85[EUR][1000 genomes]
rs9716435	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
2	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
7	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:145177200-145209200	Weak transcription	NH-A	brain
12	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
14	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
15	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
16	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
17	chr5:145185800-145202400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:145187000-145209200	Weak transcription	A549	lung
19	chr5:145191600-145206400	Weak transcription	Liver	Liver
20	chr5:145192000-145203600	Weak transcription	Adipose Nuclei	Adipose
21	chr5:145192400-145203600	Weak transcription	Left Ventricle	heart
22	chr5:145192800-145200600	Weak transcription	Lung	lung
23	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:145193000-145204000	Weak transcription	Spleen	Spleen
25	chr5:145193800-145201400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr5:145193800-145202000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:145194000-145201000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:145194400-145201800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:145194400-145201800	Strong transcription	Fetal Intestine Large	intestine
30	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
32	chr5:145195800-145203600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:145196200-145211800	Weak transcription	Gastric	stomach
34	chr5:145196800-145203600	Weak transcription	Fetal Lung	lung
35	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
36	chr5:145197400-145201400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr5:145197800-145201800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:145197800-145203600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:145197800-145206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:145197800-145206600	Weak transcription	HMEC	breast
41	chr5:145197800-145206800	Weak transcription	HepG2	liver
42	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr5:145198000-145203600	Weak transcription	Fetal Heart	heart
44	chr5:145198000-145203600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr5:145198000-145206400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr5:145198000-145206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:145198200-145206400	Weak transcription	K562	blood
49	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:145198600-145206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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