Variant report

Variant	rs34009737
Chromosome Location	chr1:95820269-95820270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10874912	0.83[AMR][1000 genomes]
rs10874914	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11165379	0.86[AMR][1000 genomes]
rs12116466	0.84[AMR][1000 genomes]
rs12118116	0.80[AMR][1000 genomes]
rs12135605	0.85[AMR][1000 genomes]
rs12565207	0.84[EUR][1000 genomes]
rs12752448	0.86[AMR][1000 genomes]
rs17589093	0.85[AMR][1000 genomes]
rs2182021	0.81[AMR][1000 genomes]
rs34988332	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4129611	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4359066	0.83[AMR][1000 genomes]
rs4408199	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4604740	0.85[AMR][1000 genomes]
rs66930640	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72723875	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs927703	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830648	chr1:95760162-95926264	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006113	chr1:95768502-96139003	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1013985	chr1:95816193-95845606	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95820200-95820600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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