Variant report

Variant	rs66930640
Chromosome Location	chr1:95807814-95807815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157242	0.81[AMR][1000 genomes]
rs10157784	0.81[AMR][1000 genomes]
rs10158228	0.81[AMR][1000 genomes]
rs10159103	0.81[AMR][1000 genomes]
rs10159378	0.81[AMR][1000 genomes]
rs10783006	0.81[AMR][1000 genomes]
rs10874912	0.88[AMR][1000 genomes]
rs10874914	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11165366	0.82[AMR][1000 genomes]
rs11165367	0.80[AMR][1000 genomes]
rs11165379	0.91[AMR][1000 genomes]
rs11165383	0.82[AMR][1000 genomes]
rs12021552	0.82[AMR][1000 genomes]
rs12022359	0.82[AMR][1000 genomes]
rs12037234	0.81[AMR][1000 genomes]
rs12040083	0.81[AMR][1000 genomes]
rs12116466	0.89[AMR][1000 genomes]
rs12118116	0.84[AMR][1000 genomes]
rs12135605	0.90[AMR][1000 genomes]
rs12562298	0.82[AMR][1000 genomes]
rs12565207	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12736643	0.82[AMR][1000 genomes]
rs12752448	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12756468	0.82[AMR][1000 genomes]
rs12756483	0.82[AMR][1000 genomes]
rs1548278	0.82[AMR][1000 genomes]
rs17113443	0.82[AMR][1000 genomes]
rs17589093	0.90[AMR][1000 genomes]
rs2182021	0.85[AMR][1000 genomes]
rs2893323	0.80[AMR][1000 genomes]
rs34009737	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34988332	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4129611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4359066	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4408199	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4579810	0.83[AMR][1000 genomes]
rs4604740	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61771812	0.82[AMR][1000 genomes]
rs72723875	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs912648	0.82[AMR][1000 genomes]
rs927703	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830648	chr1:95760162-95926264	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006113	chr1:95768502-96139003	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95806800-95810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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