Variant report

Variant	rs34021526
Chromosome Location	chr15:74131393-74131394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10519014	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636381	0.86[EUR][1000 genomes]
rs11636619	0.86[EUR][1000 genomes]
rs11639352	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913670	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915712	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958352	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958362	0.84[ASN][1000 genomes]
rs16958372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958378	0.87[ASN][1000 genomes]
rs2127016	1.00[ASN][1000 genomes]
rs2127017	1.00[ASN][1000 genomes]
rs34617511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35534436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35905425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41449350	0.87[ASN][1000 genomes]
rs58838945	0.84[ASN][1000 genomes]
rs62004658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74128800-74132000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr15:74129600-74133200	Weak transcription	Spleen	Spleen
3	chr15:74130400-74131400	Weak transcription	Right Atrium	heart
4	chr15:74130400-74132200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:74130600-74131400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:74130600-74132000	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr15:74130800-74131400	Enhancers	Aorta	Aorta
8	chr15:74130800-74132000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:74131000-74131400	Bivalent Enhancer	Adipose Nuclei	Adipose
10	chr15:74131000-74131600	Enhancers	Colon Smooth Muscle	Colon
11	chr15:74131000-74132800	Enhancers	Fetal Brain Male	brain
12	chr15:74131200-74131400	Bivalent Enhancer	Placenta	Placenta
13	chr15:74131200-74131600	Enhancers	Psoas Muscle	Psoas
14	chr15:74131200-74131600	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr15:74131200-74131800	Enhancers	Fetal Lung	lung
16	chr15:74131200-74131800	Enhancers	Ovary	ovary
17	chr15:74131200-74131800	Enhancers	Pancreas	Pancrea
18	chr15:74131200-74132000	Bivalent Enhancer	Brain Hippocampus Middle	brain
19	chr15:74131200-74132000	Bivalent Enhancer	Fetal Stomach	stomach
20	chr15:74131200-74132200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr15:74131200-74132400	Enhancers	Fetal Brain Female	brain

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