Variant report

Variant	rs34025891
Chromosome Location	chr8:9196365-9196366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:9007894..9008784-chr8:9195169..9196375,4	MCF-7	breast:
2	chr8:9195700..9196570-chr8:9534210..9534969,2	MCF-7	breast:
3	chr8:8887023..8887982-chr8:9195505..9196570,5	K562	blood:
4	chr8:9178254..9179002-chr8:9195700..9196483,2	K562	blood:
5	chr8:8608326..8608981-chr8:9195964..9196742,2	MCF-7	breast:
6	chr8:8922930..8923887-chr8:9195546..9196445,3	K562	blood:
7	chr8:9195714..9196690-chr8:9534240..9534889,2	MCF-7	breast:
8	chr8:9195933..9196478-chr8:9688212..9689059,2	MCF-7	breast:
9	chr8:8886723..8887985-chr8:9195522..9196377,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173281	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10099512	0.83[ASN][1000 genomes]
rs10106829	1.00[ASN][1000 genomes]
rs11778774	1.00[ASN][1000 genomes]
rs11779870	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11781511	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782386	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11783641	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11990096	0.86[ASN][1000 genomes]
rs12546198	0.83[AMR][1000 genomes]
rs13255273	0.86[ASN][1000 genomes]
rs13264007	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265179	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279173	0.83[ASN][1000 genomes]
rs1461729	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17660635	0.86[ASN][1000 genomes]
rs17715588	0.83[ASN][1000 genomes]
rs17716118	0.83[ASN][1000 genomes]
rs2054345	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126259	1.00[ASN][1000 genomes]
rs2126260	1.00[ASN][1000 genomes]
rs2126263	1.00[ASN][1000 genomes]
rs2126264	1.00[ASN][1000 genomes]
rs2169385	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2169387	1.00[ASN][1000 genomes]
rs28529330	0.86[ASN][1000 genomes]
rs330091	0.86[ASN][1000 genomes]
rs34271262	1.00[ASN][1000 genomes]
rs34403348	0.89[AMR][1000 genomes]
rs34523847	0.83[EUR][1000 genomes]
rs34597048	0.83[EUR][1000 genomes]
rs34906420	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35420447	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35555151	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35584813	0.86[ASN][1000 genomes]
rs35899262	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36043919	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4240624	1.00[ASN][1000 genomes]
rs4332138	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841132	1.00[ASN][1000 genomes]
rs4841133	1.00[ASN][1000 genomes]
rs60191553	1.00[ASN][1000 genomes]
rs6601299	1.00[ASN][1000 genomes]
rs66541322	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6984305	1.00[ASN][1000 genomes]
rs6985493	1.00[ASN][1000 genomes]
rs6998846	0.86[ASN][1000 genomes]
rs7002551	0.86[ASN][1000 genomes]
rs7004769	1.00[ASN][1000 genomes]
rs71516504	0.89[AMR][1000 genomes]
rs73535309	1.00[ASN][1000 genomes]
rs7357361	0.87[EUR][1000 genomes]
rs9772631	0.86[ASN][1000 genomes]
rs983308	0.86[ASN][1000 genomes]
rs983309	1.00[ASN][1000 genomes]
rs983310	0.86[ASN][1000 genomes]
rs983311	0.86[ASN][1000 genomes]
rs9987289	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1018847	chr8:9017110-9216354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1022967	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv539462	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv6073	chr8:9189800-9234741	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv890341	chr8:9192927-9243428	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9189400-9199800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:9193000-9196400	Enhancers	Fetal Heart	heart
3	chr8:9193600-9197000	Enhancers	Liver	Liver
4	chr8:9195800-9199800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:9195800-9204400	Weak transcription	Right Atrium	heart
6	chr8:9196000-9200000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:9196200-9199800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links