Variant report

Variant	rs34271262
Chromosome Location	chr8:9212419-9212420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9210981..9212635-chr8:9215863..9218673,2	K562	blood:

Variant related genes	Relation type
ENSG00000253735	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10099512	0.83[ASN][1000 genomes]
rs10106829	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778774	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779870	0.83[ASN][1000 genomes]
rs11781511	1.00[ASN][1000 genomes]
rs11990096	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13255273	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13264007	1.00[ASN][1000 genomes]
rs13265179	1.00[ASN][1000 genomes]
rs13274716	1.00[ASN][1000 genomes]
rs13279173	0.83[ASN][1000 genomes]
rs1461729	1.00[ASN][1000 genomes]
rs17660635	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17661330	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17715588	0.83[ASN][1000 genomes]
rs17716118	0.83[ASN][1000 genomes]
rs2054345	1.00[ASN][1000 genomes]
rs2126259	1.00[ASN][1000 genomes]
rs2126260	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126263	1.00[ASN][1000 genomes]
rs2126264	1.00[ASN][1000 genomes]
rs2169385	1.00[ASN][1000 genomes]
rs2169387	1.00[ASN][1000 genomes]
rs28529330	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs330091	0.86[ASN][1000 genomes]
rs34025891	1.00[ASN][1000 genomes]
rs34906420	1.00[ASN][1000 genomes]
rs35584813	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35899262	1.00[ASN][1000 genomes]
rs35922567	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36090863	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4240624	1.00[ASN][1000 genomes]
rs4332138	1.00[ASN][1000 genomes]
rs4841132	1.00[ASN][1000 genomes]
rs4841133	1.00[ASN][1000 genomes]
rs60191553	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601299	1.00[ASN][1000 genomes]
rs6984305	1.00[ASN][1000 genomes]
rs6985493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998846	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002551	0.86[ASN][1000 genomes]
rs7004769	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73535309	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650620	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9772631	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs983308	0.86[ASN][1000 genomes]
rs983309	1.00[ASN][1000 genomes]
rs983310	0.86[ASN][1000 genomes]
rs983311	0.86[ASN][1000 genomes]
rs9987289	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1018847	chr8:9017110-9216354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1022967	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv539462	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv6073	chr8:9189800-9234741	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv890341	chr8:9192927-9243428	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9207600-9216400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:9211200-9213600	Enhancers	Liver	Liver
3	chr8:9211600-9213400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links