Variant report

Variant	rs4332138
Chromosome Location	chr8:9200251-9200252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10099512	0.83[ASN][1000 genomes]
rs10106829	1.00[ASN][1000 genomes]
rs11778774	1.00[ASN][1000 genomes]
rs11779870	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11781511	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783641	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11990096	0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs12546198	0.86[GIH][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs13255273	0.86[ASN][1000 genomes]
rs13264007	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265179	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274716	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279173	0.83[ASN][1000 genomes]
rs1461729	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17660635	0.86[ASN][1000 genomes]
rs17715588	0.83[ASN][1000 genomes]
rs17716118	0.83[ASN][1000 genomes]
rs2054345	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126259	1.00[ASN][1000 genomes]
rs2126260	1.00[ASN][1000 genomes]
rs2126261	1.00[CHB][hapmap]
rs2126263	1.00[ASN][1000 genomes]
rs2126264	1.00[ASN][1000 genomes]
rs2169385	1.00[ASN][1000 genomes]
rs2169387	1.00[ASN][1000 genomes]
rs28529330	0.86[ASN][1000 genomes]
rs330091	0.86[ASN][1000 genomes]
rs34025891	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34271262	1.00[ASN][1000 genomes]
rs34403348	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34523847	0.88[EUR][1000 genomes]
rs34597048	0.88[EUR][1000 genomes]
rs34906420	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35420447	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35555151	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35584813	0.86[ASN][1000 genomes]
rs35899262	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36043919	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4240624	1.00[ASN][1000 genomes]
rs4841132	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs4841133	1.00[ASN][1000 genomes]
rs60191553	1.00[ASN][1000 genomes]
rs6601299	1.00[ASN][1000 genomes]
rs66541322	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6984305	1.00[ASN][1000 genomes]
rs6985493	1.00[ASN][1000 genomes]
rs6998846	0.86[ASN][1000 genomes]
rs7002551	0.86[ASN][1000 genomes]
rs7004769	1.00[ASN][1000 genomes]
rs7008413	0.91[MEX][hapmap]
rs71516504	0.88[AMR][1000 genomes]
rs73535309	1.00[ASN][1000 genomes]
rs7357361	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9772631	0.86[ASN][1000 genomes]
rs983308	0.86[ASN][1000 genomes]
rs983309	1.00[ASN][1000 genomes]
rs983310	0.86[ASN][1000 genomes]
rs983311	0.86[ASN][1000 genomes]
rs9987289	0.87[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1018847	chr8:9017110-9216354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1022967	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv539462	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv6073	chr8:9189800-9234741	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv890341	chr8:9192927-9243428	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4332138	FLJ10661	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9195800-9204400	Weak transcription	Right Atrium	heart
2	chr8:9199000-9200400	Enhancers	Liver	Liver
3	chr8:9200000-9200600	Enhancers	Brain Germinal Matrix	brain
4	chr8:9200200-9203800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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