Variant report

Variant	rs34033239
Chromosome Location	chr6:142677214-142677215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142667887..142670246-chr6:142675631..142677996,2	MCF-7	breast:
2	chr6:142628297..142630973-chr6:142676608..142679458,2	MCF-7	breast:
3	chr6:142675895..142678114-chr6:142681303..142684417,3	MCF-7	breast:
4	chr6:142673899..142675482-chr6:142676247..142678997,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13215906	1.00[AFR][1000 genomes]
rs13217746	1.00[AFR][1000 genomes]
rs34317838	1.00[AFR][1000 genomes]
rs34886145	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs67116010	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:142665600-142680200	Weak transcription	HUVEC	blood vessel
3	chr6:142671400-142679400	Weak transcription	Liver	Liver
4	chr6:142672600-142680800	Weak transcription	Fetal Brain Male	brain
5	chr6:142674400-142678000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:142674800-142680400	Enhancers	Fetal Lung	lung
7	chr6:142675800-142678000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:142675800-142679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:142676400-142677600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:142676400-142681000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:142676600-142677400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:142676600-142677400	Enhancers	Dnd41	blood
13	chr6:142676600-142677600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr6:142676600-142677800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:142676600-142677800	Genic enhancers	HepG2	liver
16	chr6:142676600-142677800	Enhancers	NHEK	skin
17	chr6:142676600-142678000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:142676600-142678000	Enhancers	Fetal Thymus	thymus
19	chr6:142676600-142678000	Enhancers	HMEC	breast
20	chr6:142676600-142679000	Enhancers	NHLF	lung
21	chr6:142676800-142677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:142676800-142677600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:142676800-142677600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr6:142676800-142677800	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr6:142676800-142678000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:142676800-142678000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:142676800-142688600	Weak transcription	Fetal Heart	heart
28	chr6:142677000-142677400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:142677000-142677600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:142677000-142677600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:142677000-142677600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:142677000-142677800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:142677000-142677800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:142677000-142678000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:142677000-142678200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:142677000-142679200	Weak transcription	HSMM	muscle
37	chr6:142677000-142682000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:142677000-142682000	Weak transcription	Placenta	Placenta
39	chr6:142677200-142677400	Active TSS	Thymus	Thymus
40	chr6:142677200-142677400	Enhancers	A549	lung
41	chr6:142677200-142677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:142677200-142677800	Enhancers	Fetal Intestine Small	intestine

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