Variant report

Variant	rs67116010
Chromosome Location	chr6:142689980-142689981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142687131..142689757-chr6:142689967..142691514,2	MCF-7	breast:
2	chr6:142621406..142625298-chr6:142688620..142694485,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112414	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34033239	1.00[AMR][1000 genomes]
rs34317838	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142679400-142693200	Weak transcription	Hela-S3	cervix
2	chr6:142681000-142695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:142682600-142694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:142682800-142693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:142682800-142694600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:142683200-142693400	Weak transcription	HSMM	muscle
7	chr6:142683400-142693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:142683600-142693200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:142683800-142691400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:142683800-142693200	Weak transcription	HMEC	breast
11	chr6:142683800-142693400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:142683800-142693400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:142683800-142693400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:142683800-142693600	Weak transcription	Placenta	Placenta
15	chr6:142684000-142691400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:142688800-142693600	Weak transcription	Osteobl	bone
17	chr6:142689200-142690000	Weak transcription	HepG2	liver
18	chr6:142689200-142690400	Weak transcription	Fetal Lung	lung
19	chr6:142689200-142692800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:142689400-142690400	Active TSS	A549	lung
21	chr6:142689400-142693600	Weak transcription	NHLF	lung
22	chr6:142689400-142696000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:142689600-142691400	Weak transcription	Liver	Liver
24	chr6:142689600-142691400	Weak transcription	HUVEC	blood vessel

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