The 2.0 version of rSNPBase

Variant report

Variant rs34041880
Chromosome Location chr6:5234805-5234806
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5176200-5239600 Weak transcription Thymus Thymus
2 chr6:5206200-5246800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr6:5206600-5240800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr6:5208200-5259800 Weak transcription Primary B cells from peripheral blood blood
5 chr6:5208400-5239800 Weak transcription Liver Liver
6 chr6:5214600-5241000 Weak transcription Brain Germinal Matrix brain
7 chr6:5214600-5248800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr6:5214800-5248800 Weak transcription A549 lung
9 chr6:5215000-5241400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr6:5215000-5244800 Weak transcription Gastric stomach
11 chr6:5215000-5252600 Weak transcription Stomach Smooth Muscle stomach
12 chr6:5215000-5257400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr6:5215000-5259800 Weak transcription Primary T cells fromperipheralblood blood
14 chr6:5215200-5239400 Weak transcription Aorta Aorta
15 chr6:5215200-5239400 Weak transcription Fetal Muscle Leg muscle
16 chr6:5215200-5239800 Weak transcription Esophagus oesophagus
17 chr6:5215200-5239800 Weak transcription Lung lung
18 chr6:5215200-5244800 Weak transcription Left Ventricle heart
19 chr6:5215200-5244800 Weak transcription Right Ventricle heart
20 chr6:5215400-5239600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr6:5215400-5259800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr6:5215600-5251600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr6:5215600-5254600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr6:5215600-5259800 Weak transcription NHDF-Ad bronchial
25 chr6:5215800-5235200 Weak transcription Fetal Intestine Small intestine
26 chr6:5215800-5251200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr6:5216000-5240200 Weak transcription Primary hematopoietic stem cells blood
28 chr6:5216200-5235000 Weak transcription Fetal Intestine Large intestine
29 chr6:5216200-5241200 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr6:5216200-5251400 Weak transcription Fetal Brain Female brain
31 chr6:5216400-5235800 Weak transcription Hela-S3 cervix
32 chr6:5216400-5259600 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr6:5216600-5239400 Weak transcription Fetal Muscle Trunk muscle
34 chr6:5216600-5239800 Weak transcription Pancreas Pancrea
35 chr6:5216600-5244800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr6:5216600-5259600 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr6:5220000-5245600 Weak transcription HMEC breast
38 chr6:5220200-5240600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr6:5220400-5240200 Weak transcription Fetal Kidney kidney
40 chr6:5220600-5235000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr6:5220800-5259600 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr6:5221000-5239400 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr6:5222400-5253800 Weak transcription Dnd41 blood
44 chr6:5222800-5244800 Weak transcription Primary B cells from cord blood blood
45 chr6:5224400-5239600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr6:5224600-5235200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr6:5226800-5239400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr6:5227800-5259800 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr6:5230000-5245800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr6:5230200-5246400 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015