The 2.0 version of rSNPBase

Variant report

Variant rs34110180
Chromosome Location chr6:5225170-5225171
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5176200-5239600 Weak transcription Thymus Thymus
2 chr6:5206200-5246800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr6:5206600-5240800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr6:5206800-5232400 Weak transcription Psoas Muscle Psoas
5 chr6:5207000-5231000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr6:5208200-5259800 Weak transcription Primary B cells from peripheral blood blood
7 chr6:5208400-5231400 Weak transcription Brain Anterior Caudate brain
8 chr6:5208400-5239800 Weak transcription Liver Liver
9 chr6:5208800-5231000 Weak transcription Brain Angular Gyrus brain
10 chr6:5210000-5230400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr6:5212600-5230800 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr6:5214200-5231600 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr6:5214600-5241000 Weak transcription Brain Germinal Matrix brain
14 chr6:5214600-5248800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr6:5214800-5231600 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr6:5214800-5248800 Weak transcription A549 lung
17 chr6:5215000-5241400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr6:5215000-5244800 Weak transcription Gastric stomach
19 chr6:5215000-5252600 Weak transcription Stomach Smooth Muscle stomach
20 chr6:5215000-5257400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr6:5215000-5259800 Weak transcription Primary T cells fromperipheralblood blood
22 chr6:5215200-5227400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr6:5215200-5239400 Weak transcription Aorta Aorta
24 chr6:5215200-5239400 Weak transcription Fetal Muscle Leg muscle
25 chr6:5215200-5239800 Weak transcription Esophagus oesophagus
26 chr6:5215200-5239800 Weak transcription Lung lung
27 chr6:5215200-5244800 Weak transcription Left Ventricle heart
28 chr6:5215200-5244800 Weak transcription Right Ventricle heart
29 chr6:5215400-5239600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr6:5215400-5259800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr6:5215600-5229600 Weak transcription Muscle Satellite Cultured Cells --
32 chr6:5215600-5230400 Weak transcription HSMM muscle
33 chr6:5215600-5251600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr6:5215600-5254600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr6:5215600-5259800 Weak transcription NHDF-Ad bronchial
36 chr6:5215800-5235200 Weak transcription Fetal Intestine Small intestine
37 chr6:5215800-5251200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr6:5216000-5229400 Weak transcription Osteobl bone
39 chr6:5216000-5240200 Weak transcription Primary hematopoietic stem cells blood
40 chr6:5216200-5235000 Weak transcription Fetal Intestine Large intestine
41 chr6:5216200-5241200 Weak transcription Primary T helper cells fromperipheralblood blood
42 chr6:5216200-5251400 Weak transcription Fetal Brain Female brain
43 chr6:5216400-5231200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr6:5216400-5233400 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr6:5216400-5235800 Weak transcription Hela-S3 cervix
46 chr6:5216400-5259600 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr6:5216600-5230200 Weak transcription K562 blood
48 chr6:5216600-5239400 Weak transcription Fetal Muscle Trunk muscle
49 chr6:5216600-5239800 Weak transcription Pancreas Pancrea
50 chr6:5216600-5244800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015