Variant report

Variant	rs34070817
Chromosome Location	chr1:223606851-223606852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1619161	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1713213	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1772288	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1772289	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1819706	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2678369	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2678370	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58890471	1.00[AFR][1000 genomes]
rs825136	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs825137	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs825141	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs825142	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs825143	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs825145	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs825146	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs825148	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs866637	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv873208	chr1:223603809-223639469	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223595200-223609200	Weak transcription	Right Atrium	heart
2	chr1:223603000-223609000	Weak transcription	Left Ventricle	heart
3	chr1:223603800-223609000	Weak transcription	Right Ventricle	heart
4	chr1:223604200-223608600	Weak transcription	Pancreas	Pancrea
5	chr1:223604200-223609200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:223604400-223608200	Weak transcription	Fetal Heart	heart
7	chr1:223606800-223609000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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