Variant report

Variant	rs1619161
Chromosome Location	chr1:223594362-223594363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223585376..223587984-chr1:223593733..223596236,2	MCF-7	breast:
2	chr1:223592334..223594672-chr1:223600258..223603185,3	K562	blood:
3	chr1:223566045..223568415-chr1:223593690..223595373,2	MCF-7	breast:
4	chr1:223594003..223597385-chr1:223616098..223619072,3	MCF-7	breast:
5	chr1:223566366..223568039-chr1:223593781..223595649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178395	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11261269	0.86[EUR][1000 genomes]
rs12087387	0.86[EUR][1000 genomes]
rs12405882	0.82[EUR][1000 genomes]
rs1713213	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1772288	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1772289	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819706	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2353204	0.86[EUR][1000 genomes]
rs2678369	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2678370	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34070817	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59584296	0.86[EUR][1000 genomes]
rs6701453	0.85[CHB][hapmap]
rs825136	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825141	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs825142	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs825143	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs825144	0.88[ASN][1000 genomes]
rs825145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs825146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs825148	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866637	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223591200-223595200	Enhancers	Pancreas	Pancrea
2	chr1:223592400-223596000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:223592600-223594600	Weak transcription	Right Atrium	heart
4	chr1:223592600-223594800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:223592600-223595200	Enhancers	Fetal Heart	heart
6	chr1:223592600-223597400	Weak transcription	Right Ventricle	heart
7	chr1:223592800-223594600	Weak transcription	Ovary	ovary
8	chr1:223593200-223594400	Weak transcription	Left Ventricle	heart
9	chr1:223593600-223594800	Enhancers	Fetal Brain Female	brain
10	chr1:223593600-223595200	Enhancers	Gastric	stomach
11	chr1:223594200-223595000	Enhancers	Liver	Liver

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