Variant report

Variant	rs12087387
Chromosome Location	chr1:223583820-223583821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223575712..223579320-chr1:223583036..223585021,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10907375	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11261265	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11261268	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11261269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11579995	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12064476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12074609	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12074782	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12078619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12082133	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12094897	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12405882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1619161	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1713213	0.82[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs17162005	0.86[ASN][1000 genomes]
rs17163836	0.86[ASN][1000 genomes]
rs1772288	0.86[EUR][1000 genomes]
rs1772289	0.86[EUR][1000 genomes]
rs1819706	0.86[EUR][1000 genomes]
rs1914612	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2298063	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2353204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501982	0.86[EUR][1000 genomes]
rs2678369	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs2678370	0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs28788929	0.86[ASN][1000 genomes]
rs28897212	0.86[ASN][1000 genomes]
rs34482638	0.88[AMR][1000 genomes]
rs35059272	0.88[AMR][1000 genomes]
rs35345617	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35727959	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35736338	0.86[ASN][1000 genomes]
rs35996176	0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59584296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61838211	0.88[AMR][1000 genomes]
rs61838233	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61838244	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6661314	0.86[ASN][1000 genomes]
rs6677044	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6679661	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6682552	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6689850	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6700523	0.86[ASN][1000 genomes]
rs6701453	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs825136	0.86[EUR][1000 genomes]
rs825137	0.86[EUR][1000 genomes]
rs825142	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs825143	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs825145	0.86[EUR][1000 genomes]
rs825146	0.86[EUR][1000 genomes]
rs825148	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs866637	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223582200-223590800	Weak transcription	Fetal Heart	heart
2	chr1:223583400-223585600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:223583400-223585800	Enhancers	NHLF	lung
4	chr1:223583600-223585400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:223583800-223585200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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