Variant report

Variant	rs35736338
Chromosome Location	chr1:223527365-223527366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223523045..223525039-chr1:223526417..223529119,2	K562	blood:
2	chr1:223526043..223528249-chr1:223565401..223568259,2	K562	blood:
3	chr1:223527067..223530000-chr1:223534908..223536771,2	K562	blood:
4	chr1:223519202..223521587-chr1:223525632..223530010,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178395	Chromatin interaction
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10907375	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11261268	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11261269	0.88[ASN][1000 genomes]
rs11579995	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12064476	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12074609	0.81[ASN][1000 genomes]
rs12074782	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12078619	0.87[ASN][1000 genomes]
rs12082133	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12087387	0.86[ASN][1000 genomes]
rs12094897	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12405882	0.88[ASN][1000 genomes]
rs1400964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547789	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1621030	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17162005	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163834	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17163836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282399	0.94[EUR][1000 genomes]
rs2298063	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2353204	0.88[ASN][1000 genomes]
rs28788929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897212	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482638	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35059272	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35345617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35727959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996176	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs41460051	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4661241	0.94[EUR][1000 genomes]
rs59584296	0.88[ASN][1000 genomes]
rs61838203	0.87[ASN][1000 genomes]
rs61838204	0.87[ASN][1000 genomes]
rs61838211	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61838232	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61838233	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838244	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838245	0.92[ASN][1000 genomes]
rs6604707	0.94[EUR][1000 genomes]
rs6661314	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677044	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6679661	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6682552	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6689850	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6700523	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701453	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs862216	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223514400-223535800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:223517600-223527400	Enhancers	Ovary	ovary
3	chr1:223526400-223527400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:223526600-223527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:223526600-223530200	Weak transcription	Esophagus	oesophagus
6	chr1:223526600-223534000	Weak transcription	Primary T cells from cord blood	blood
7	chr1:223526800-223527800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:223526800-223528000	Enhancers	Liver	Liver
9	chr1:223527000-223528000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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