Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:223530700..223533144-chr1:223535218..223537707,3	MCF-7	breast:
2	chr1:223531318..223534020-chr1:223565340..223568095,2	MCF-7	breast:
3	chr1:223528933..223533041-chr1:223533611..223537910,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178395	Chromatin interaction
ENSG00000143502	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10907375	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11261265	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1400964	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1547789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17162005	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17163834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163836	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1914612	1.00[CEU][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2282399	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501982	0.83[ASN][1000 genomes]
rs28788929	0.87[EUR][1000 genomes]
rs28897212	0.94[EUR][1000 genomes]
rs34572097	0.82[AMR][1000 genomes]
rs35345617	1.00[CEU][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs35727959	1.00[CEU][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes]
rs35736338	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs35996176	1.00[CEU][hapmap]
rs4661241	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604707	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661314	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6700523	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223514400-223535800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:223526600-223534000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:223528000-223535000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:223528000-223536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:223530000-223532000	Weak transcription	NHEK	skin
6	chr1:223530200-223532200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:223530600-223532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:223530600-223533600	Weak transcription	Esophagus	oesophagus
9	chr1:223531200-223536400	Weak transcription	Psoas Muscle	Psoas

Quick Search: