Variant report

Variant	rs11261265
Chromosome Location	chr1:223551652-223551653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223550342..223552222-chr1:223556341..223557941,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10907375	0.81[AFR][1000 genomes]
rs11261269	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11579995	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12064476	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12074609	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12074782	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs12078619	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12082133	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs12087387	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12094897	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12405882	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1547789	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17163834	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2282399	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2298063	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2353204	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2501982	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34572097	0.82[AMR][1000 genomes]
rs41460051	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4661241	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59584296	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6604707	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6661314	0.81[AFR][1000 genomes]
rs6677044	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6679661	1.00[CEU][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes]
rs6682552	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6689850	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6700523	0.81[AFR][1000 genomes]
rs6701453	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3442824	chr1:223551129-223553127	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3354316	chr1:223551529-223552627	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223550400-223552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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