Variant report

Variant	rs6661314
Chromosome Location	chr1:223545666-223545667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr1:223545386-223545894	A549	lung:	n/a	n/a
2	FOXA2	chr1:223545450-223545756	A549	lung:	n/a	n/a

Variant related genes	Relation type
RNU4-57P	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10907375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11261265	0.81[AFR][1000 genomes]
rs11261268	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11261269	0.88[ASN][1000 genomes]
rs11579995	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12064476	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12074609	0.81[ASN][1000 genomes]
rs12074782	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12078619	0.87[ASN][1000 genomes]
rs12082133	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12087387	0.86[ASN][1000 genomes]
rs12094897	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12405882	0.88[ASN][1000 genomes]
rs1400964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547789	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1621030	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17162005	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163834	0.94[EUR][1000 genomes]
rs17163836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282399	0.94[EUR][1000 genomes]
rs2298063	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2353204	0.88[ASN][1000 genomes]
rs28788929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897212	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482638	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35059272	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35345617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35727959	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35736338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996176	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs41460051	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4661241	0.94[EUR][1000 genomes]
rs59584296	0.88[ASN][1000 genomes]
rs61838203	0.87[ASN][1000 genomes]
rs61838204	0.87[ASN][1000 genomes]
rs61838211	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61838232	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61838233	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838244	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838245	0.92[ASN][1000 genomes]
rs6604707	0.94[EUR][1000 genomes]
rs6677044	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6679661	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6682552	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6689850	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6700523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701453	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs862216	0.87[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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