Variant report

Variant	rs61838232
Chromosome Location	chr1:223506007-223506008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223505491..223507807-chr1:223513867..223516012,2	K562	blood:
2	chr1:223504054..223506980-chr1:223508583..223510799,2	K562	blood:
3	chr1:223503941..223506228-chr1:223511294..223513326,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10907375	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11488548	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11579995	0.81[ASN][1000 genomes]
rs12064476	0.84[ASN][1000 genomes]
rs12094897	0.87[ASN][1000 genomes]
rs1400964	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1621030	0.82[AMR][1000 genomes]
rs17162005	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17163836	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1914612	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2298063	0.81[ASN][1000 genomes]
rs28788929	0.90[ASN][1000 genomes]
rs28897212	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34482638	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34572097	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35059272	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35345617	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35727959	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35736338	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35996176	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838203	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838204	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838211	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838233	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838244	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838245	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661314	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6677044	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6679661	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6682552	0.81[ASN][1000 genomes]
rs6689850	0.81[ASN][1000 genomes]
rs6700523	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6701453	0.84[ASN][1000 genomes]
rs825128	0.82[AFR][1000 genomes]
rs862216	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223497200-223512600	Weak transcription	Pancreas	Pancrea
2	chr1:223497400-223510400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:223501400-223506400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:223504200-223506600	Enhancers	Fetal Thymus	thymus
5	chr1:223504400-223506800	Enhancers	Fetal Heart	heart
6	chr1:223504400-223507000	Weak transcription	Brain Anterior Caudate	brain
7	chr1:223504800-223506200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:223504800-223506200	Enhancers	NH-A	brain
9	chr1:223505200-223509400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:223505600-223506800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:223505600-223511800	Weak transcription	Ovary	ovary
12	chr1:223505600-223512600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:223505600-223514800	Weak transcription	Right Atrium	heart
14	chr1:223505600-223521400	Weak transcription	Primary T cells from cord blood	blood
15	chr1:223505800-223513000	Weak transcription	Fetal Lung	lung
16	chr1:223506000-223506600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:223506000-223506600	Enhancers	Esophagus	oesophagus

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