Variant report

Variant	rs61838204
Chromosome Location	chr1:223485714-223485715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223462981..223465642-chr1:223484099..223486031,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10907375	0.87[ASN][1000 genomes]
rs11488548	0.89[EUR][1000 genomes]
rs11579995	0.88[AMR][1000 genomes]
rs12064476	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12094897	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1400964	0.87[ASN][1000 genomes]
rs17162005	0.87[ASN][1000 genomes]
rs17163836	0.87[ASN][1000 genomes]
rs1914612	0.85[ASN][1000 genomes]
rs2298063	0.88[AMR][1000 genomes]
rs28788929	0.87[ASN][1000 genomes]
rs28897212	0.87[ASN][1000 genomes]
rs34482638	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34572097	0.89[EUR][1000 genomes]
rs35059272	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345617	0.87[ASN][1000 genomes]
rs35727959	0.87[ASN][1000 genomes]
rs35736338	0.87[ASN][1000 genomes]
rs35996176	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61838203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838211	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838232	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838233	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61838244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61838245	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6661314	0.87[ASN][1000 genomes]
rs6677044	0.81[ASN][1000 genomes]
rs6682552	0.88[AMR][1000 genomes]
rs6689850	0.88[AMR][1000 genomes]
rs6700523	0.87[ASN][1000 genomes]
rs6701453	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs862216	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv518979	chr1:223468336-223488310	Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223470000-223493200	Weak transcription	Esophagus	oesophagus
2	chr1:223482200-223486600	Weak transcription	Ovary	ovary
3	chr1:223482200-223488200	Weak transcription	Fetal Thymus	thymus
4	chr1:223482200-223488600	Weak transcription	Primary T cells from cord blood	blood
5	chr1:223482200-223488600	Weak transcription	Thymus	Thymus
6	chr1:223484400-223485800	Enhancers	Pancreatic Islets	Pancreatic Islet

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