Variant report

Variant	rs61838245
Chromosome Location	chr1:223520206-223520207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223514593..223516719-chr1:223519953..223521559,2	K562	blood:
2	chr1:223519202..223521587-chr1:223525632..223530010,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10907375	0.92[ASN][1000 genomes]
rs11261269	0.81[ASN][1000 genomes]
rs11488548	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11579995	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12064476	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12094897	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12405882	0.81[ASN][1000 genomes]
rs1400964	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17162005	0.92[ASN][1000 genomes]
rs17163836	0.92[ASN][1000 genomes]
rs1914612	0.90[ASN][1000 genomes]
rs2298063	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2353204	0.81[ASN][1000 genomes]
rs28788929	0.92[ASN][1000 genomes]
rs28897212	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34482638	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34572097	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35059272	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35345617	0.92[ASN][1000 genomes]
rs35727959	0.92[ASN][1000 genomes]
rs35736338	0.92[ASN][1000 genomes]
rs35996176	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59584296	0.81[ASN][1000 genomes]
rs61838203	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61838204	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61838211	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61838232	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61838233	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61838244	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61838246	0.86[AFR][1000 genomes]
rs6661314	0.92[ASN][1000 genomes]
rs6677044	0.86[ASN][1000 genomes]
rs6679661	0.82[ASN][1000 genomes]
rs6682552	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6689850	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6700523	0.92[ASN][1000 genomes]
rs6701453	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs862216	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223505600-223521400	Weak transcription	Primary T cells from cord blood	blood
2	chr1:223506600-223526000	Weak transcription	Esophagus	oesophagus
3	chr1:223511800-223527000	Enhancers	Fetal Heart	heart
4	chr1:223514000-223526200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:223514400-223535800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:223515400-223523200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:223515600-223523400	Weak transcription	Gastric	stomach
8	chr1:223517600-223527400	Enhancers	Ovary	ovary
9	chr1:223518200-223520600	Weak transcription	Right Atrium	heart
10	chr1:223518200-223520800	Weak transcription	Stomach Mucosa	stomach

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