Variant report

Variant	rs61838211
Chromosome Location	chr1:223497402-223497403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223471938..223473458-chr1:223497150..223499757,2	K562	blood:
2	chr1:223497129..223500114-chr1:223509294..223511393,2	K562	blood:
3	chr1:223496498..223499043-chr1:223513776..223516102,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10907375	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11261269	0.88[AMR][1000 genomes]
rs11488548	0.89[EUR][1000 genomes]
rs11579995	1.00[AMR][1000 genomes]
rs12064476	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12074609	0.82[AMR][1000 genomes]
rs12078619	0.88[AMR][1000 genomes]
rs12087387	0.88[AMR][1000 genomes]
rs12094897	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12405882	0.88[AMR][1000 genomes]
rs1400964	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17162005	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17163836	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1914612	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2298063	1.00[AMR][1000 genomes]
rs2353204	0.88[AMR][1000 genomes]
rs28788929	0.87[ASN][1000 genomes]
rs28897212	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34482638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34572097	0.89[EUR][1000 genomes]
rs35059272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345617	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35727959	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35736338	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35996176	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59584296	0.88[AMR][1000 genomes]
rs61838203	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838204	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838232	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61838244	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61838245	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6661314	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6677044	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6679661	0.84[AMR][1000 genomes]
rs6682552	1.00[AMR][1000 genomes]
rs6689850	1.00[AMR][1000 genomes]
rs6700523	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6701453	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs862216	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223495200-223498400	Enhancers	Fetal Thymus	thymus
2	chr1:223495600-223498400	Enhancers	Primary T cells from cord blood	blood
3	chr1:223495600-223498400	Enhancers	Thymus	Thymus
4	chr1:223495800-223498200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:223496000-223498000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:223496000-223498200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:223496000-223498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:223496200-223498200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:223496200-223498200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:223496400-223498200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:223496400-223498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:223496400-223498400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:223496800-223497600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:223496800-223497600	Flanking Active TSS	Dnd41	blood
15	chr1:223497200-223497600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr1:223497200-223498000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:223497200-223504200	Weak transcription	Right Atrium	heart
18	chr1:223497200-223512600	Weak transcription	Pancreas	Pancrea
19	chr1:223497400-223497600	Enhancers	Fetal Heart	heart
20	chr1:223497400-223497800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr1:223497400-223498000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:223497400-223510400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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